MD09G1266100.v1.1

Protein GAMETE EXPRESSED

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
34065467 .. 34067897
2431 bp
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UTR
Exon/CDS
Intron
MD09G1266100.v1.1.491

Sequence Viewer

Length: 1782 bp
ATGGGGAATCTTAGTAATCTTCTACTTCTGCTGATTTTGGTATCGACTCCGTTGGACTGTCACTCATGGGGTTGGTTCTCCTCGTCCGACAAGACCTACTCGAGCGAAAACCCTTCTGGTACGAAGGACGCTTCCGGTGGTTCAGTTGGTAAATTCTCCATGGATGGTCTTGATGACCAGAAGGGAATCCGGCTTGTCGAAAATGCTAAGAAGAAACTGGTAGGTTCAGACTCTTGTTGGCAAAATGCTTATCGACATCTCTTTGCTGGGTGCTCGGAGATTTTCGCTGTTGAAGACAAGCGGTCAAGATTTGCTTGGCATCTCAGTGATTGCTTTCAGAAGGATTCCGGCAGGCCTCCTTTTCCTTCGTGTGACTCGAAATCTGCCATGCATAAATGCCTCAAGAGTTTGAATGACCATGAGCACAAGGTCTATTTGGAATTCTACCTTGAAACCAACTCTATCTGCCATCAGTTACAGGCTCGAGTATTTAAGCATGAAACAGAGAGATTAGTGAATGAACTTAAGAACTCAGCACAATATGCAGAGACCAAGTTGGAAACAATTGAAGAGAAAGCAGAATACCTACTGCAGGGCTCAAATCAAATATATGACTCTTTGAATTCAATTGATCTTCGGACACAGCAAGTGGCGGAAACTGCAAGAAATGTAGGAGATCATATAGGCATAGTGTTGAAGCATTCGGCAGCAGTTTACGAGCAATCCAAGAAAATCGAAGCTTCTCAGTCGGAGCTACAAGAAGGTCAAATAGAAATGAAGAGAAATTTAAACGAAGGGATGGCAGTGCTGCAAGATTCATACAGCCAATTGGGTAAAGAAATCGATAACTTGAGAGATGAAGCTGTAGAAATCGAAAAGGAGATCATTAAAGTTGGAGGTGAAATGTCATCTCGGATGGAAAATCTGCAATCCAAAGCTGACGATATCGGGAATATGGCTGGGCTCTCTTTGGATAAGCAGCATCAGCTTCTAGATGGACAGACGACCGCTCTCAAGGATCTTCAGTTTTTAACCAAATTTCAATCTGAAGCGTTAGAAGAGAGCAGGAGTACACTTCAACGATTAGCGGAATATGGCCATCGACAACAAGAAGAGCTTCTTCAGAAGCAACAACAACTTCAGCAGGTTCACGATCATTTGATGGAAAATTCAAAGTCTATCTTGGCAGCTCAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCGTTGCATTAGATAAACTCTTTGCTTTGCACAATGCTATGTTGCTTGAGTCGCGCATAATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGTTATCTACATGTTCACAAGCACAAAGCAAACATACACAGTGAGACCATGGCTATATATCGGGCTGTGCACTACTTTCTTGATAGAAGTAGCGATAATTCGCTTCACAGTGAGTGATATTGAACACCAAACATGGAAAATAAACCTTTTCCGGTCAATCTTTGCAGTCATTGCTTTAGTTCAGCTAATATATGCAATTTTCACATACAGGGACTATGAAGTGTTGAACCATCAGTTGTTACATACATTGATTGAGAAGGTTAATGGCATGCAACGAAACCAGAAGTTGTCATGGGAAGCAGATAGTGATTTAAACTGGTCCTCGTGGGTTGACACCAACTTACCTGAAGATGTAGACAGTTCTGAAGACCCTGATTACTTAGTTCCTGAAGAAGTTGGCGGAAATTTTATCACAGCTTCAACTCTAAAAGAGTATGATCTCCGCCAACGTCTTCTTCATTGA

Protein Analysis

594

Amino Acids

67.78

Weight (kDa)

5.33

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1135
AccBSI CCGCTC 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 1674
AccII CGCG 1 cut(s) 1279
AciI CCGC 6 cut(s) 301, 653, 1008, 1088, 1719, 1762
AclWI GGATC 1 cut(s) 1026
AcoI YGGCCR 1 cut(s) 1096
AcsI RAATTY 7 cut(s) 152, 440, 622, 784, 1037, 1168, 1723
AcuI CTGAAG 7 cut(s) 1007, 1068, 1106, 1124, 1686, 1704, 1728
AfaI GTAC 2 cut(s) 121, 1072
AfiI CCNNNNNNNGG 1 cut(s) 592
AflII CTTAAG 1 cut(s) 524
AflIII ACRYGT 1 cut(s) 1329
AhdI GACNNNNNGTC 1 cut(s) 301
AjuI GAANNNNNNNTTGG 1 cut(s) 1758
Alw21I GWGCWC 3 cut(s) 275, 426, 1391
Alw26I GTCTC 2 cut(s) 542, 1357
Alw44I GTGCAC 1 cut(s) 1387
AlwI GGATC 1 cut(s) 1026
Ama87I CYCGRG 2 cut(s) 100, 483
AoxI GGCC 2 cut(s) 353, 1096
ApaLI GTGCAC 1 cut(s) 1387
ApeKI GCWGC 4 cut(s) 707, 808, 979, 1187
ApoI RAATTY 7 cut(s) 152, 440, 622, 784, 1037, 1168, 1723
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 1 cut(s) 1281
AspS9I GGNCC 1 cut(s) 1638
AsuHPI GGTGA 1 cut(s) 911
AvaI CYCGRG 2 cut(s) 100, 483
AvaII GGWCC 1 cut(s) 1638
BaeGI GKGCMC 1 cut(s) 1391
BalI TGGCCA 1 cut(s) 1098
BanII GRGCYC 2 cut(s) 599, 966
BauI CACGAG 1 cut(s) 1642
BbsI GAAGAC 3 cut(s) 300, 1692, 1763
Bbv12I GWGCWC 3 cut(s) 275, 426, 1391
BbvI GCAGC 4 cut(s) 719, 795, 991, 1199
BccI CCATC 8 cut(s) 158, 477, 793, 910, 989, 1107, 1156, 1557
BcoDI GTCTC 2 cut(s) 542, 1357
BfaI CTAG 1 cut(s) 992
BfmI CTRYAG 2 cut(s) 590, 864
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 1135
BisI GCNGC 4 cut(s) 708, 809, 980, 1188
BlsI GCNGC 4 cut(s) 709, 810, 981, 1189
Bme18I GGWCC 1 cut(s) 1638
BmeRI GACNNNNNGTC 1 cut(s) 301
BmeT110I CYCGRG 2 cut(s) 100, 483
BmgT120I GGNCC 1 cut(s) 1638
BmsI GCATC 2 cut(s) 328, 991
BpiI GAAGAC 3 cut(s) 300, 1692, 1763
Bpu10I CCTNAGC 1 cut(s) 1191
BpuEI CTTGAG 4 cut(s) 386, 871, 998, 1292
Bsa29I ATCGAT 1 cut(s) 843
BsaI GGTCTC 2 cut(s) 542, 1357
BsaJI CCNNGG 2 cut(s) 159, 1367
BsaWI WCCGGW 2 cut(s) 134, 1470
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse1I ACTGG 2 cut(s) 222, 1640
Bse3DI GCAATG 1 cut(s) 1488
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 2 cut(s) 159, 1367
BseGI GGATG 3 cut(s) 169, 804, 921
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMI GCAATG 1 cut(s) 1488
BseMII CTCAG 4 cut(s) 337, 546, 758, 1205
BseNI ACTGG 2 cut(s) 222, 1640
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 1391
BseXI GCAGC 4 cut(s) 719, 795, 991, 1199
BseYI CCCAGC 2 cut(s) 266, 959
Bsh1236I CGCG 1 cut(s) 1279
Bsh1285I CGRYCG 1 cut(s) 1008
BshFI GGCC 2 cut(s) 355, 1098
BshVI ATCGAT 1 cut(s) 843
BsiEI CGRYCG 1 cut(s) 1008
BsiHKAI GWGCWC 3 cut(s) 275, 426, 1391
BsiHKCI CYCGRG 2 cut(s) 100, 483
BsiSI CCGG 4 cut(s) 135, 190, 348, 1471
BslFI GGGAC 1 cut(s) 1544
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 2 cut(s) 542, 1357
BsmFI GGGAC 1 cut(s) 1544
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 2 cut(s) 355, 1098
Bso31I GGTCTC 2 cut(s) 542, 1357
BsoBI CYCGRG 2 cut(s) 100, 483
Bsp1286I GDGCHC 5 cut(s) 275, 426, 599, 966, 1391
Bsp143I GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
Bsp19I CCATGG 2 cut(s) 159, 1367
BspACI CCGC 6 cut(s) 301, 653, 1008, 1088, 1719, 1762
BspANI GGCC 2 cut(s) 355, 1098
BspCNI CTCAG 4 cut(s) 336, 545, 757, 1204
BspDI ATCGAT 1 cut(s) 843
BspFNI CGCG 1 cut(s) 1279
BspMAI CTGCAG 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 1135
BspPI GGATC 1 cut(s) 1026
BspQI GCTCTTC 1 cut(s) 1107
BspTI CTTAAG 1 cut(s) 524
BspTNI GGTCTC 2 cut(s) 542, 1357
BsrBI CCGCTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 1488
BsrI ACTGG 2 cut(s) 222, 1640
BssECI CCNNGG 2 cut(s) 159, 1367
BssMI GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
BssSI CACGAG 1 cut(s) 1642
BssT1I CCWWGG 2 cut(s) 159, 1367
Bst2BI CACGAG 1 cut(s) 1642
Bst4CI ACNGT 4 cut(s) 59, 1360, 1429, 1679
Bst6I CTCTTC 4 cut(s) 564, 773, 1053, 1107
BstAFI CTTAAG 1 cut(s) 524
BstAPI GCANNNNNTGC 2 cut(s) 542, 1490
BstC8I GCNNGC 4 cut(s) 353, 1215, 1219, 1589
BstDEI CTNAG 7 cut(s) 11, 207, 323, 532, 744, 1191, 1699
BstDSI CCRYGG 2 cut(s) 159, 1367
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 3 cut(s) 169, 804, 921
BstFNI CGCG 1 cut(s) 1279
BstHHI GCGC 1 cut(s) 1281
BstKTI GATC 6 cut(s) 634, 679, 885, 1021, 1156, 1759
BstMAI GTCTC 2 cut(s) 542, 1357
BstMBI GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
BstMCI CGRYCG 1 cut(s) 1008
BstMWI GCNNNNNNNGC 5 cut(s) 542, 659, 985, 1276, 1490
BstNSI RCATGY 3 cut(s) 1225, 1333, 1591
BstSFI CTRYAG 2 cut(s) 590, 864
BstSLI GKGCMC 1 cut(s) 1391
BstUI CGCG 1 cut(s) 1279
BstV1I GCAGC 4 cut(s) 719, 795, 991, 1199
BstV2I GAAGAC 3 cut(s) 300, 1692, 1763
BstX2I RGATCY 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1018
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 2 cut(s) 355, 1098
BsuTUI ATCGAT 1 cut(s) 843
BtgI CCRYGG 2 cut(s) 159, 1367
BtsCI GGATG 3 cut(s) 169, 804, 921
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 4 cut(s) 331, 810, 1365, 1434
BveI ACCTGC 1 cut(s) 1135
Cac8I GCNNGC 4 cut(s) 353, 1215, 1219, 1589
CfoI GCGC 1 cut(s) 1281
Cfr13I GGNCC 1 cut(s) 1638
ClaI ATCGAT 1 cut(s) 843
CseI GACGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 120, 1071
CviQI GTAC 2 cut(s) 120, 1071
DdeI CTNAG 7 cut(s) 11, 207, 323, 532, 744, 1191, 1699
DpnI GATC 6 cut(s) 633, 678, 884, 1020, 1155, 1758
DpnII GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
DraI TTTAAA 2 cut(s) 789, 1632
DriI GACNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 1096
Eam1104I CTCTTC 4 cut(s) 564, 773, 1053, 1107
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 4 cut(s) 564, 773, 1053, 1107
EciI GGCGGA 3 cut(s) 668, 1734, 1751
Eco130I CCWWGG 2 cut(s) 159, 1367
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 2 cut(s) 599, 966
Eco31I GGTCTC 2 cut(s) 542, 1357
Eco32I GATATC 1 cut(s) 946
Eco47I GGWCC 1 cut(s) 1638
Eco57I CTGAAG 7 cut(s) 1007, 1068, 1106, 1124, 1686, 1704, 1728
Eco88I CYCGRG 2 cut(s) 100, 483
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRI GAATTC 2 cut(s) 440, 622
EcoRV GATATC 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 159, 1367
EcoT22I ATGCAT 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 599, 966
ErhI CCWWGG 2 cut(s) 159, 1367
FalI AAGNNNNNCTT 8 cut(s) 298, 330, 1101, 1133, 1104, 1136, 1166, 1198
FaqI GGGAC 1 cut(s) 1544
FblI GTMKAC 1 cut(s) 1674
Fnu4HI GCNGC 4 cut(s) 708, 809, 980, 1188
FokI GGATG 3 cut(s) 176, 811, 928
FriOI GRGCYC 2 cut(s) 599, 966
Fsp4HI GCNGC 4 cut(s) 708, 809, 980, 1188
FspBI CTAG 1 cut(s) 992
GlaI GCGC 1 cut(s) 1280
GluI GCNGC 4 cut(s) 708, 809, 980, 1188
GsaI CCCAGC 2 cut(s) 270, 963
HaeIII GGCC 2 cut(s) 355, 1098
HapII CCGG 4 cut(s) 135, 190, 348, 1471
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 1281
Hin6I GCGC 1 cut(s) 1279
HinP1I GCGC 1 cut(s) 1279
HincII GTYRAC 1 cut(s) 1651
HindII GTYRAC 1 cut(s) 1651
HindIII AAGCTT 2 cut(s) 738, 1290
HpaII CCGG 4 cut(s) 135, 190, 348, 1471
HphI GGTGA 1 cut(s) 911
Hpy166II GTNNAC 7 cut(s) 715, 1073, 1150, 1335, 1389, 1651, 1675
Hpy188III TCNNGA 9 cut(s) 170, 306, 403, 949, 992, 1151, 1193, 1399, 1706
Hpy8I GTNNAC 7 cut(s) 715, 1073, 1150, 1335, 1389, 1651, 1675
HpyAV CCTTC 8 cut(s) 118, 123, 175, 334, 375, 755, 788, 1570
HpyCH4III ACNGT 4 cut(s) 59, 1360, 1429, 1679
HpyCH4IV ACGT 1 cut(s) 1768
HpyF10VI GCNNNNNNNGC 5 cut(s) 542, 659, 985, 1276, 1490
HpyF3I CTNAG 7 cut(s) 11, 207, 323, 532, 744, 1191, 1699
HpySE526I ACGT 1 cut(s) 1768
HspAI GCGC 1 cut(s) 1279
Kzo9I GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 4 cut(s) 719, 795, 991, 1199
LweI GCATC 2 cut(s) 328, 991
MaeI CTAG 1 cut(s) 992
MaeII ACGT 1 cut(s) 1768
MaeIII GTNAC 4 cut(s) 59, 371, 474, 1557
MalI GATC 6 cut(s) 633, 678, 884, 1020, 1155, 1758
MbiI CCGCTC 1 cut(s) 1010
MboI GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
MfeI CAATTG 3 cut(s) 564, 627, 827
MflI RGATCY 1 cut(s) 1018
MhlI GDGCHC 5 cut(s) 275, 426, 599, 966, 1391
MlsI TGGCCA 1 cut(s) 1098
MluNI TGGCCA 1 cut(s) 1098
MlyI GAGTC 5 cut(s) 40, 224, 368, 608, 1283
MmeI TCCRAC 5 cut(s) 33, 111, 537, 729, 874
MnlI CCTC 5 cut(s) 91, 366, 410, 890, 1651
Mox20I TGGCCA 1 cut(s) 1098
Mph1103I ATGCAT 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 1116
MscI TGGCCA 1 cut(s) 1098
MseI TTAA 7 cut(s) 492, 525, 788, 888, 1031, 1581, 1631
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 1098
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 4 cut(s) 135, 190, 348, 1471
MunI CAATTG 3 cut(s) 564, 627, 827
Mva1269I GAATGC 1 cut(s) 700
MvnI CGCG 1 cut(s) 1279
MwoI GCNNNNNNNGC 5 cut(s) 542, 659, 985, 1276, 1490
NcoI CCATGG 2 cut(s) 159, 1367
NdeII GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
NmuCI GTSAC 2 cut(s) 59, 371
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 3 cut(s) 1225, 1333, 1591
PaeI GCATGC 1 cut(s) 1591
PaeR7I CTCGAG 2 cut(s) 100, 483
PceI AGGCCT 1 cut(s) 355
PciI ACATGT 1 cut(s) 1329
PciSI GCTCTTC 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 700
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 6 cut(s) 7, 186, 344, 815, 1196, 1205
PkrI GCNGC 4 cut(s) 709, 810, 981, 1189
PleI GAGTC 5 cut(s) 40, 224, 368, 608, 1282
PpsI GAGTC 5 cut(s) 40, 224, 368, 608, 1282
PscI ACATGT 1 cut(s) 1329
PspFI CCCAGC 2 cut(s) 266, 959
PspPI GGNCC 1 cut(s) 1638
PspXI VCTCGAGB 2 cut(s) 100, 483
PstI CTGCAG 1 cut(s) 594
PsuI RGATCY 1 cut(s) 1018
RsaI GTAC 2 cut(s) 121, 1072
RsaNI GTAC 2 cut(s) 120, 1071
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 7 cut(s) 492, 525, 788, 888, 1031, 1581, 1631
SatI GCNGC 4 cut(s) 708, 809, 980, 1188
Sau3AI GATC 6 cut(s) 631, 676, 882, 1018, 1153, 1756
Sau96I GGNCC 1 cut(s) 1638
SchI GAGTC 5 cut(s) 40, 224, 368, 608, 1283
SduI GDGCHC 5 cut(s) 275, 426, 599, 966, 1391
SfaNI GCATC 2 cut(s) 328, 991
SfcI CTRYAG 2 cut(s) 590, 864
Sfr274I CTCGAG 2 cut(s) 100, 483
SinI GGWCC 1 cut(s) 1638
SlaI CTCGAG 2 cut(s) 100, 483
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 7 cut(s) 100, 401, 483, 524, 850, 1013, 1271
SmoI CTYRAG 7 cut(s) 100, 401, 483, 524, 850, 1013, 1271
SphI GCATGC 1 cut(s) 1591
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 6 cut(s) 301, 653, 1008, 1088, 1719, 1762
SspMI CTAG 1 cut(s) 992
StuI AGGCCT 1 cut(s) 355
StyI CCWWGG 2 cut(s) 159, 1367
TaaI ACNGT 4 cut(s) 59, 1360, 1429, 1679
TaiI ACGT 1 cut(s) 1771
TatI WGTACW 1 cut(s) 1070
TfiI GAWTC 6 cut(s) 7, 186, 344, 815, 1196, 1205
Tru1I TTAA 7 cut(s) 492, 525, 788, 888, 1031, 1581, 1631
Tru9I TTAA 7 cut(s) 492, 525, 788, 888, 1031, 1581, 1631
TscAI CASTG 4 cut(s) 331, 810, 1365, 1434
TseFI GTSAC 2 cut(s) 59, 371
TseI GCWGC 4 cut(s) 707, 808, 979, 1187
Tsp45I GTSAC 2 cut(s) 59, 371
TspDTI ATGAA 7 cut(s) 513, 534, 791, 807, 873, 1551, 1766
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 4 cut(s) 331, 810, 1365, 1434
Vha464I CTTAAG 1 cut(s) 524
VneI GTGCAC 1 cut(s) 1387
VpaK11BI GGWCC 1 cut(s) 1638
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 7 cut(s) 152, 440, 622, 784, 1037, 1168, 1723
XbaI TCTAGA 1 cut(s) 991
XceI RCATGY 3 cut(s) 1225, 1333, 1591
XhoI CTCGAG 2 cut(s) 100, 483
XmiI GTMKAC 1 cut(s) 1674
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 1 cut(s) 992
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.