Rroxscaffold_2G00092150

Protein GAMETE EXPRESSED

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
13673639 .. 13675942
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092150.1

Sequence Viewer

Length: 1776 bp
ATGGGCCGATTCAAATCCCTTCTTTTCATGTTGATCTTCCTAACTCTATCAAGGTCTTGTATGTCTTATTGGTGGTTCTTTTCTTCTTCTTCTTCTACTGGCCAGAAACCTCCAGAAACTCTGCAAATATCCGGTGATGTTTCGGTTGAATTCTCCATGAAAGCTTTCCATAACGAAAAGGCAATTGAACGGATAGAAGAGGCTGGTAAAAAAAAACTGAAATCTTGTTGGGATGATGCTTATAGAGCACTATTTACATCATGCTCCGAAATTTCCAGCGACAAGAATGATATGAAGAAGAGGTTTTCTTGGGAACTAAGCAACTGCTTTCAGAAGGACATCGGAAGGTCTCCTTTTCCTTCGTGCCGTAAAGGCTCTCCCATGAAAGATTGCCTTGAAAAATTGGACGACAGTGCTATTCAGACTTACCGGGCATTCTTCCTCGAGACCGAGTCTCATGTATTCAGGGCTGAGACAGAAAAGTTGGTGAATGAATTGGTGAAGTCAGCTGATTATGCAGAGGGCAAATTAGACACCATAGCAGAACAATCAGAGAAATTGTTGGAGGGTTCAAAATATATACACATATCTTTGACTTCAATTGACAAGCAGACACAAGAAATGGCTCAAACTTCCAAGAAAGTTGGTGATCAAATTGGTAATATAGTGAAGCAGTCAGAGGTAATGTTTGAGCAATCTGAGAAGATTGCTGCATCTCAATTAGAATTGCAAAAAGGGCAAGACAAAATGAAGGAAAATTTGCAAGAGGGCATGGAAGTGATTCATGAGTCTTATCATGCTCTAGGTAAAGAAATACACAGTTTACAGAATGAGACTATTGAAATAGAGAAGAAGGTAACCGAAGTTGGCGACACCGTGTCTACAAAGATGAACAGCCTCCAAAGTAAGGCTGATGATATTAGCAATGTAACAGAGATTTCCTTGGAAAAGCAAAAAGAACTTCTGGAAGGTCAATCCGAAGCTCTTGACGGGCTTCAGTCACTAACTAAATTCCAGGTTCAAGCTGTAGAAGAGAGCAGGGGTATTTTGCAGCAATTGGCTAAATTTGGTCGTGAACAGCAAGAAGAGCTACTTCGGCAACAAGAACAGATTAAACAAGGCCATGACAATCTGGTTAAAAATTCGAAGTCCATACTGGCAGCTCAGGAAGCTTTTGAACAAAAGCAAGAAACCATGTTTGTTGCTTTGGAAAAGCTATTCAAATTGCACAATGCCTTGTTGCTCGAATCGAGATCAATCAAAGCTTTCTTTCTTTATTCCATATCGATGTTTGTCATCTACTTGTCGACCAGCACAAAGCAAACTTACAAAGTGAGACCCATACTTTACATAGGTCTATGCGTTGCATTTTTGATTGAATTAGCAACGCTTAGGTTTTCAAGAAATGGAGTAGAGCAACAGACTTTGATAGTCAATGGTATTAGGCTCCTTTATGTGTTGTTTTCTTTAGTTCTGGTAGTATACGCCGCCTTCACATATAGGGACTATGAAATGCTGAACTACAACATGCTGAAAAATCTAACAGAGGAGTTTCTAAGGTTTCAAAAAAATGCTGCTTCGCCATTGGTTAGCGATGACTCATCAGATGATGATAATGATGACTCGGACTCGATTACATCTGTTGACACTGACGTTAATGATGGCATTGAAAACCTGATGGACCACTCCTCCTATCATATATCTGAGGAGGTTGGAGATAATTCAAATCTTATTTCTTCGAGTACCAGAAGATATAATCTCCGCAGTCGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

591

Amino Acids

67.47

Weight (kDa)

5.3

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 881, 1307, 1482
AciI CCGC 2 cut(s) 1488, 1762
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 6 cut(s) 149, 270, 757, 1010, 1064, 1141
AcuI CTGAAG 1 cut(s) 980
AfaI GTAC 1 cut(s) 1744
AfiI CCNNNNNNNGG 1 cut(s) 907
AhdI GACNNNNNGTC 1 cut(s) 877
AjnI CCWGG 1 cut(s) 1014
AluBI AGCT 9 cut(s) 164, 509, 983, 1025, 1090, 1163, 1172, 1216, 1265
AluI AGCT 9 cut(s) 164, 509, 983, 1025, 1090, 1163, 1172, 1216, 1265
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 6 cut(s) 354, 440, 459, 467, 827, 1330
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 3 cut(s) 4, 100, 1120
ApeKI GCWGC 4 cut(s) 710, 1051, 1160, 1574
ApoI RAATTY 6 cut(s) 149, 270, 757, 1010, 1064, 1141
Asp700I GAANNNNTTC 2 cut(s) 164, 780
AspS9I GGNCC 2 cut(s) 4, 1681
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 4 cut(s) 146, 499, 511, 659
AsuII TTCGAA 1 cut(s) 1145
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 1681
BalI TGGCCA 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 4 cut(s) 697, 1063, 1172, 1561
BccI CCATC 2 cut(s) 1655, 1672
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 1016
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 6 cut(s) 354, 440, 459, 467, 827, 1330
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 1 cut(s) 1026
BglI GCCNNNNNGGC 1 cut(s) 372
BisI GCNGC 5 cut(s) 711, 1052, 1161, 1488, 1575
BlsI GCNGC 5 cut(s) 712, 1053, 1162, 1489, 1576
Bme1390I CCNGG 2 cut(s) 431, 1016
Bme18I GGWCC 1 cut(s) 1681
BmeRI GACNNNNNGTC 1 cut(s) 877
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 4, 1681
BmiI GGNNCC 1 cut(s) 1448
BmrFI CCNGG 2 cut(s) 431, 1016
BmsI GCATC 2 cut(s) 226, 722
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 2 cut(s) 1164, 1391
Bpu14I TTCGAA 1 cut(s) 1145
BpuMI CCSGG 1 cut(s) 431
Bsa29I ATCGAT 1 cut(s) 1286
BsaBI GATNNNNATC 1 cut(s) 13
BsaI GGTCTC 3 cut(s) 354, 440, 1330
BsaJI CCNNGG 1 cut(s) 942
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 1673, 1703
Bsc4I CCNNNNNNNGG 1 cut(s) 907
Bse1I ACTGG 2 cut(s) 103, 1161
Bse3DI GCAATG 1 cut(s) 931
Bse8I GATNNNNATC 1 cut(s) 13
BseBI CCWGG 1 cut(s) 1016
BseCI ATCGAT 1 cut(s) 1286
BseDI CCNNGG 1 cut(s) 942
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 907
BseMI GCAATG 1 cut(s) 931
BseMII CTCAG 4 cut(s) 462, 690, 1178, 1695
BseNI ACTGG 2 cut(s) 103, 1161
BseRI GAGGAG 3 cut(s) 1562, 1678, 1721
BseXI GCAGC 4 cut(s) 697, 1063, 1172, 1561
BshFI GGCC 3 cut(s) 6, 102, 1122
BshVI ATCGAT 1 cut(s) 1286
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 2 cut(s) 132, 430
BslFI GGGAC 1 cut(s) 1517
BslI CCNNNNNNNGG 1 cut(s) 907
BsmAI GTCTC 6 cut(s) 354, 440, 459, 467, 827, 1330
BsmFI GGGAC 1 cut(s) 1517
BsmI GAATGC 1 cut(s) 434
BsnI GGCC 3 cut(s) 6, 102, 1122
Bso31I GGTCTC 3 cut(s) 354, 440, 1330
BsoBI CYCGRG 1 cut(s) 443
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 33, 649, 1253
BspACI CCGC 2 cut(s) 1488, 1762
BspANI GGCC 3 cut(s) 6, 102, 1122
BspCNI CTCAG 4 cut(s) 463, 691, 1177, 1696
BspDI ATCGAT 1 cut(s) 1286
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 1 cut(s) 1448
BspQI GCTCTTC 1 cut(s) 1080
BspT104I TTCGAA 1 cut(s) 1145
BspTNI GGTCTC 3 cut(s) 354, 440, 1330
BsrDI GCAATG 1 cut(s) 931
BsrI ACTGG 2 cut(s) 103, 1161
BssECI CCNNGG 1 cut(s) 942
BssMI GATC 3 cut(s) 33, 649, 1253
BssNAI GTATAC 1 cut(s) 1483
BssT1I CCWWGG 1 cut(s) 942
Bst1107I GTATAC 1 cut(s) 1483
Bst2UI CCWGG 1 cut(s) 1016
Bst4CI ACNGT 3 cut(s) 413, 821, 877
Bst6I CTCTTC 4 cut(s) 192, 293, 1026, 1080
BstBI TTCGAA 1 cut(s) 1145
BstDEI CTNAG 7 cut(s) 317, 471, 699, 1164, 1391, 1556, 1704
BstEII GGTNACC 1 cut(s) 856
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 3 cut(s) 36, 652, 1256
BstMAI GTCTC 6 cut(s) 354, 440, 459, 467, 827, 1330
BstMBI GATC 3 cut(s) 33, 649, 1253
BstMWI GCNNNNNNNGC 7 cut(s) 245, 372, 515, 736, 1087, 1096, 1169
BstNI CCWGG 1 cut(s) 1016
BstNSI RCATGY 1 cut(s) 1531
BstPI GGTNACC 1 cut(s) 856
BstSCI CCNGG 2 cut(s) 429, 1014
BstSFI CTRYAG 1 cut(s) 1026
BstV1I GCAGC 4 cut(s) 697, 1063, 1172, 1561
BstZ17I GTATAC 1 cut(s) 1483
Bsu15I ATCGAT 1 cut(s) 1286
BsuRI GGCC 3 cut(s) 6, 102, 1122
BsuTUI ATCGAT 1 cut(s) 1286
BtgZI GCGATG 1 cut(s) 1608
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 418, 1647
CciI TCATGA 1 cut(s) 784
Cfr13I GGNCC 2 cut(s) 4, 1681
ClaI ATCGAT 1 cut(s) 1286
Csp6I GTAC 1 cut(s) 1743
CviQI GTAC 1 cut(s) 1743
DdeI CTNAG 7 cut(s) 317, 471, 699, 1164, 1391, 1556, 1704
DpnI GATC 3 cut(s) 35, 651, 1255
DpnII GATC 3 cut(s) 33, 649, 1253
DriI GACNNNNNGTC 1 cut(s) 877
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 4 cut(s) 192, 293, 1026, 1080
Eam1105I GACNNNNNGTC 1 cut(s) 877
EarI CTCTTC 4 cut(s) 192, 293, 1026, 1080
Eco130I CCWWGG 1 cut(s) 942
Eco31I GGTCTC 3 cut(s) 354, 440, 1330
Eco47I GGWCC 1 cut(s) 1681
Eco57I CTGAAG 1 cut(s) 980
Eco88I CYCGRG 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 856
EcoO65I GGTNACC 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 1014
EcoT14I CCWWGG 1 cut(s) 942
ErhI CCWWGG 1 cut(s) 942
FalI AAGNNNNNCTT 6 cut(s) 337, 369, 378, 410, 1077, 1109
FaqI GGGAC 1 cut(s) 1517
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 3 cut(s) 881, 1307, 1482
Fnu4HI GCNGC 5 cut(s) 711, 1052, 1161, 1488, 1575
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 5 cut(s) 711, 1052, 1161, 1488, 1575
FspBI CTAG 1 cut(s) 803
GluI GCNGC 5 cut(s) 711, 1052, 1161, 1488, 1575
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 3 cut(s) 6, 102, 1122
HapII CCGG 2 cut(s) 132, 430
HincII GTYRAC 2 cut(s) 1308, 1645
HindII GTYRAC 2 cut(s) 1308, 1645
HindIII AAGCTT 3 cut(s) 162, 1170, 1263
HinfI GANTC 8 cut(s) 9, 452, 781, 788, 1247, 1598, 1622, 1628
HpaII CCGG 2 cut(s) 132, 430
HphI GGTGA 4 cut(s) 146, 499, 511, 659
Hpy166II GTNNAC 6 cut(s) 824, 882, 1076, 1308, 1483, 1645
Hpy188III TCNNGA 9 cut(s) 113, 445, 785, 965, 986, 1073, 1166, 1251, 1401
Hpy8I GTNNAC 6 cut(s) 824, 882, 1076, 1308, 1483, 1645
Hpy99I CGWCG 1 cut(s) 1773
HpyAV CCTTC 8 cut(s) 29, 328, 339, 369, 745, 847, 962, 1501
HpyCH4III ACNGT 3 cut(s) 413, 821, 877
HpyCH4IV ACGT 1 cut(s) 1653
HpyCH4V TGCA 8 cut(s) 124, 518, 713, 730, 763, 1051, 1228, 1367
HpyF10VI GCNNNNNNNGC 7 cut(s) 245, 372, 515, 736, 1087, 1096, 1169
HpyF3I CTNAG 7 cut(s) 317, 471, 699, 1164, 1391, 1556, 1704
HpySE526I ACGT 1 cut(s) 1653
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 3 cut(s) 33, 649, 1253
LguI GCTCTTC 1 cut(s) 1080
LmnI GCTCC 2 cut(s) 269, 1452
Lsp1109I GCAGC 4 cut(s) 697, 1063, 1172, 1561
LweI GCATC 2 cut(s) 226, 722
MaeI CTAG 1 cut(s) 803
MaeII ACGT 1 cut(s) 1653
MaeIII GTNAC 3 cut(s) 856, 928, 999
MalI GATC 3 cut(s) 35, 651, 1255
MboI GATC 3 cut(s) 33, 649, 1253
MfeI CAATTG 3 cut(s) 183, 600, 1055
MhlI GDGCHC 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 102
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 5 cut(s) 461, 797, 1592, 1616, 1622
MmeI TCCRAC 2 cut(s) 543, 1693
Mox20I TGGCCA 1 cut(s) 102
MroXI GAANNNNTTC 2 cut(s) 164, 780
MscI TGGCCA 1 cut(s) 102
MseI TTAA 4 cut(s) 1113, 1137, 1656, 1774
MslI CAYNNNNRTG 2 cut(s) 776, 1286
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 2 cut(s) 132, 430
MspR9I CCNGG 2 cut(s) 431, 1016
MunI CAATTG 3 cut(s) 183, 600, 1055
Mva1269I GAATGC 1 cut(s) 434
MvaI CCWGG 1 cut(s) 1016
MwoI GCNNNNNNNGC 7 cut(s) 245, 372, 515, 736, 1087, 1096, 1169
NciI CCSGG 1 cut(s) 431
NdeII GATC 3 cut(s) 33, 649, 1253
NlaIV GGNNCC 1 cut(s) 1448
NmuCI GTSAC 1 cut(s) 999
NspI RCATGY 1 cut(s) 1531
NspV TTCGAA 1 cut(s) 1145
PaeR7I CTCGAG 1 cut(s) 443
PagI TCATGA 1 cut(s) 784
PciSI GCTCTTC 1 cut(s) 1080
PctI GAATGC 1 cut(s) 434
PdmI GAANNNNTTC 2 cut(s) 164, 780
PfeI GAWTC 3 cut(s) 9, 781, 1247
PflFI GACNNNGTC 1 cut(s) 451
PkrI GCNGC 5 cut(s) 712, 1053, 1162, 1489, 1576
PleI GAGTC 5 cut(s) 460, 796, 1592, 1616, 1622
PpsI GAGTC 5 cut(s) 460, 796, 1592, 1616, 1622
Psp6I CCWGG 1 cut(s) 1014
PspEI GGTNACC 1 cut(s) 856
PspGI CCWGG 1 cut(s) 1014
PspN4I GGNNCC 1 cut(s) 1448
PspPI GGNCC 2 cut(s) 4, 1681
PsyI GACNNNGTC 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 1744
RsaNI GTAC 1 cut(s) 1743
RseI CAYNNNNRTG 2 cut(s) 776, 1286
SalI GTCGAC 1 cut(s) 1306
SapI GCTCTTC 1 cut(s) 1080
SaqAI TTAA 4 cut(s) 1113, 1137, 1656, 1774
SatI GCNGC 5 cut(s) 711, 1052, 1161, 1488, 1575
Sau3AI GATC 3 cut(s) 33, 649, 1253
Sau96I GGNCC 2 cut(s) 4, 1681
SchI GAGTC 5 cut(s) 461, 797, 1592, 1616, 1622
ScrFI CCNGG 2 cut(s) 431, 1016
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 2 cut(s) 226, 722
SfcI CTRYAG 1 cut(s) 1026
Sfr274I CTCGAG 1 cut(s) 443
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 1 cut(s) 1681
SlaI CTCGAG 1 cut(s) 443
SmiMI CAYNNNNRTG 2 cut(s) 776, 1286
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
SsiI CCGC 2 cut(s) 1488, 1762
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 2 cut(s) 429, 1014
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 3 cut(s) 413, 821, 877
TaiI ACGT 1 cut(s) 1656
TaqI TCGA 8 cut(s) 444, 1145, 1245, 1250, 1286, 1307, 1631, 1739
TaqII GACCGA 1 cut(s) 464
TauI GCSGC 1 cut(s) 1490
TfiI GAWTC 3 cut(s) 9, 781, 1247
Tru1I TTAA 4 cut(s) 1113, 1137, 1656, 1774
Tru9I TTAA 4 cut(s) 1113, 1137, 1656, 1774
TscAI CASTG 2 cut(s) 418, 1654
TseFI GTSAC 1 cut(s) 999
TseI GCWGC 4 cut(s) 710, 1051, 1160, 1574
Tsp45I GTSAC 1 cut(s) 999
TspDTI ATGAA 9 cut(s) 16, 173, 308, 398, 507, 764, 773, 905, 1524
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 2 cut(s) 418, 1654
Tth111I GACNNNGTC 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 1681
XapI RAATTY 6 cut(s) 149, 270, 757, 1010, 1064, 1141
XceI RCATGY 1 cut(s) 1531
XhoI CTCGAG 1 cut(s) 443
XmiI GTMKAC 3 cut(s) 881, 1307, 1482
XmnI GAANNNNTTC 2 cut(s) 164, 780
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.