Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

10894697 .. 10902012

Gene Structure 7316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTACATAACTACATTGCCCAACCACTGGAAAACAGGGTATTGACTTCAGCAGTTCAGCCTTCTAGATATTGGTTGACTGGGGTGGGAACTGGGTCAAATTCAGCTCAGTATGCAGAAGGCAAGTTGGAAATAATTGAAGAGAAGGCAGAGCATCTACTGCATGGGTCAAATCAAATATTTGAGTCTTTGAATTCGATTGATCTTCGAACACAGCAAGTTGCTCAGACTGCACAAAATGTGGAAGATCATATAGATGTGGTGTTGAAGCATTCCGCAACAGTTTATGAGCAATCAAGGAAAATCCAAGATTCTCAATCTGAGCTGCAAGAAGGACAAGTAGAAATGAAGAAAAATTTGAAGGAAGGAATGGCAATGTTGCAGGATTCATACAGCCATTTGGGACAAGAAATCGATAACTTGAAAAATGAAGCTGTTGAAGTTGAAAAAGAGATAACCAAAGTCGGAGACCAAATGTCGTCTAGGATGGAGAATCTGCAGGTCAAAGCAGATGACATTAGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAGCTTCTAGATGGAAAAACAACAGCTCTCAAGGAGCTCGACTTTTTAACCAAATTTCAATCCGAGGCACTAGAAGAGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.01

Weight (kDa)

4.91

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	1 cut(s)	276
AcsI	RAATTY	4 cut(s)	100, 193, 355, 608
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	8 cut(s)	140, 193, 268, 361, 424, 440, 446, 614
AhdI	GACNNNNNGTC	1 cut(s)	475
AluBI	AGCT	6 cut(s)	107, 325, 434, 559, 581, 592
AluI	AGCT	6 cut(s)	107, 325, 434, 559, 581, 592
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	325, 556
ApoI	RAATTY	4 cut(s)	100, 193, 355, 608
AsuII	TTCGAA	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	537, 594
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	312, 568
BccI	CCATC	2 cut(s)	481, 560
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	4 cut(s)	66, 483, 563, 626
BfmI	CTRYAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	2 cut(s)	326, 557
BlsI	GCNGC	2 cut(s)	327, 558
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmrI	ACTGGG	2 cut(s)	90, 102
BmsI	GCATC	1 cut(s)	163
BmuI	ACTGGG	2 cut(s)	90, 102
Bpu14I	TTCGAA	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	3 cut(s)	33, 85, 97
Bse3DI	GCAATG	2 cut(s)	15, 381
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	2 cut(s)	15, 381
BseMII	CTCAG	3 cut(s)	122, 239, 312
BseNI	ACTGG	3 cut(s)	33, 85, 97
BseXI	GCAGC	2 cut(s)	312, 568
BsgI	GTGCAG	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	462
Bsp119I	TTCGAA	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	537, 594
Bsp143I	GATC	2 cut(s)	202, 247
BspACI	CCGC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	121, 238, 313
BspDI	ATCGAT	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	462
BsrDI	GCAATG	2 cut(s)	15, 381
BsrI	ACTGG	3 cut(s)	33, 85, 97
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	2 cut(s)	202, 247
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	135, 624
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	108, 225, 321
BstF5I	GGATG	1 cut(s)	492
BstKTI	GATC	2 cut(s)	205, 250
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	2 cut(s)	202, 247
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 160, 230, 556
BstNSI	RCATGY	1 cut(s)	640
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	312, 568
Bsu15I	ATCGAT	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	490
ClaI	ATCGAT	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	2 cut(s)	164, 637
CviJI	RGCY	9 cut(s)	61, 107, 325, 396, 434, 535, 559, 581, 592
CviKI_1	RGCY	9 cut(s)	61, 107, 325, 396, 434, 535, 559, 581, 592
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	3 cut(s)	108, 225, 321
DpnI	GATC	2 cut(s)	204, 249
DpnII	GATC	2 cut(s)	202, 247
DriI	GACNNNNNGTC	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	135, 624
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EarI	CTCTTC	2 cut(s)	135, 624
Ecl136II	GAGCTC	1 cut(s)	592
Eco24I	GRGCYC	2 cut(s)	537, 594
Eco31I	GGTCTC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	592
EcoRI	GAATTC	1 cut(s)	193
EcoT38I	GRGCYC	2 cut(s)	537, 594
FaeI	CATG	2 cut(s)	167, 640
FaiI	YATR	9 cut(s)	9, 114, 165, 252, 254, 288, 391, 527, 638
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	2 cut(s)	163, 636
Fnu4HI	GCNGC	2 cut(s)	326, 557
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	2 cut(s)	537, 594
Fsp4HI	GCNGC	2 cut(s)	326, 557
FspBI	CTAG	4 cut(s)	66, 483, 563, 626
GluI	GCNGC	2 cut(s)	326, 557
Hin1II	CATG	2 cut(s)	167, 640
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	4 cut(s)	185, 311, 386, 493
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	4 cut(s)	228, 322, 467, 619
Hpy188III	TCNNGA	2 cut(s)	66, 563
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	6 cut(s)	72, 113, 139, 326, 355, 359
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	6 cut(s)	116, 163, 233, 328, 382, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 160, 230, 556
HpyF3I	CTNAG	3 cut(s)	108, 225, 321
Hsp92II	CATG	2 cut(s)	167, 640
Kzo9I	GATC	2 cut(s)	202, 247
LmnI	GCTCC	1 cut(s)	589
LpnPI	CCDG	7 cut(s)	14, 22, 66, 78, 368, 485, 516
Lsp1109I	GCAGC	2 cut(s)	312, 568
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	4 cut(s)	66, 483, 563, 626
MalI	GATC	2 cut(s)	204, 249
MboI	GATC	2 cut(s)	202, 247
MboII	GAAGA	5 cut(s)	152, 197, 257, 361, 641
MhlI	GDGCHC	2 cut(s)	537, 594
MluCI	AATT	5 cut(s)	100, 135, 193, 355, 608
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	108, 445
MnlI	CCTC	1 cut(s)	613
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	271
MwoI	GCNNNNNNNGC	4 cut(s)	113, 160, 230, 556
NdeII	GATC	2 cut(s)	202, 247
NlaIII	CATG	2 cut(s)	167, 640
NspI	RCATGY	1 cut(s)	640
NspV	TTCGAA	1 cut(s)	208
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	311, 386, 493
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	327, 558
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	594
PstI	CTGCAG	1 cut(s)	501
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	2 cut(s)	326, 557
Sau3AI	GATC	2 cut(s)	202, 247
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	537, 594
SetI	ASST	7 cut(s)	109, 327, 436, 504, 561, 583, 594
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	100, 135, 193, 355, 608
SsiI	CCGC	1 cut(s)	276
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	4 cut(s)	66, 483, 563, 626
SstI	GAGCTC	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	4 cut(s)	197, 208, 414, 594
TasI	AATT	5 cut(s)	100, 135, 193, 355, 608
TfiI	GAWTC	3 cut(s)	311, 386, 493
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	2 cut(s)	325, 556
TspDTI	ATGAA	3 cut(s)	362, 378, 444
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	28
XapI	RAATTY	4 cut(s)	100, 193, 355, 608
XbaI	TCTAGA	2 cut(s)	65, 562
XceI	RCATGY	1 cut(s)	640
XspI	CTAG	4 cut(s)	66, 483, 563, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.