Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000083.1

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Forward (+)

90955 .. 92812

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000083.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ctggtaagatattggttgactggggtgggaactgggtcaaattcagctcagtatgcagaaggcaagttggaaataattgaagagaaggcagagcatctactgcaggggtcaaatcaaatatttgagtctttgaattcgattgatcttcgaacacagcaagttgctcagactgcacaaaatgtggaagatcatatagatgtggtgttgaagcattccgcaacagtttatgagcaatcaaggaaaatccaagattctcaatctgagctgcaagaaggacaagtagaaatgaagaaaaatttgaaggaaggaatggcaatgttgcaggattcatacagccatttgggacaagaaatcgataacttgaaaaatgaagctgttgaagttgaaaaagagataaccaaagtcggagaccaaatgtcgtctaggatgaagaatctgcaggtcaaagcagatgacattaggaatatggcagggctctctttggacaagcaaaagcagcttctagatggacaaacaacagctctcaaggagctcgactttttaaccaaatttcaatccgaggcactagaagagagcaggaaaaccctacaacggttaactgaatatggtcacagacaacaagaagagcttcttcagaagcaactacagcttcaaaaagttcatgatcacctgatggaaaactcaaagtcaatgttggaggcacaggaatcttttgaatcaaagcaagccagcatgttcgccgcattagacaagctattggctttgcacaatgctatgctgcttgaatcacggagaaaagaaaaggaggaggggcaaggcggagctccggtgtggatagcgtctttggcggatctggtgaatttgaaaagagagatgagagaccaggtgtgccaaaggaagaggaggaggaggatagcggaggcggaggcagagaaggaggagagtggaggcggtggctgcagtagagagcagtcgggtgctggtcggaggtggagaataaggaagaggaggacgggtgttcgtcaggtgtcgtggtgtctactgtctagggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

40.08

Weight (kDa)

6.82

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	1039
AciI	CCGC	7 cut(s)	216, 741, 819, 848, 917, 923, 951
AclWI	GGATC	1 cut(s)	858
AcsI	RAATTY	5 cut(s)	40, 133, 295, 548, 859
AcuI	CTGAAG	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	591
AhdI	GACNNNNNGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	882
Alw21I	GWGCWC	2 cut(s)	534, 826
Alw26I	GTCTC	2 cut(s)	402, 873
AlwI	GGATC	1 cut(s)	858
ApeKI	GCWGC	4 cut(s)	265, 496, 778, 957
ApoI	RAATTY	5 cut(s)	40, 133, 295, 548, 859
Asp700I	GAANNNNTTC	1 cut(s)	627
AsuHPI	GGTGA	2 cut(s)	659, 868
AsuII	TTCGAA	1 cut(s)	148
BanII	GRGCYC	3 cut(s)	477, 534, 826
Bbv12I	GWGCWC	2 cut(s)	534, 826
BbvI	GCAGC	4 cut(s)	252, 508, 765, 944
BccI	CCATC	2 cut(s)	500, 667
BciT130I	CCWGG	1 cut(s)	884
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	402, 873
BfaI	CTAG	4 cut(s)	423, 503, 566, 1047
BfmI	CTRYAG	4 cut(s)	101, 437, 644, 958
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	5 cut(s)	266, 497, 741, 779, 958
BlsI	GCNGC	5 cut(s)	267, 498, 742, 780, 959
Bme1390I	CCNGG	1 cut(s)	884
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	884
BmrI	ACTGGG	2 cut(s)	30, 42
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	2 cut(s)	30, 42
Bpu14I	TTCGAA	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	509
Bsa29I	ATCGAT	1 cut(s)	354
BsaI	GGTCTC	2 cut(s)	402, 873
BsaJI	CCNNGG	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	4 cut(s)	813, 843, 1000, 1030
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse1I	ACTGG	2 cut(s)	25, 37
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	884
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	62, 179, 252
BseNI	ACTGG	2 cut(s)	25, 37
BseRI	GAGGAG	6 cut(s)	821, 916, 919, 922, 953, 1021
BseXI	GCAGC	4 cut(s)	252, 508, 765, 944
BsgI	GTGCAG	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	534, 826
BsiSI	CCGG	1 cut(s)	827
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	2 cut(s)	402, 873
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	211
Bso31I	GGTCTC	2 cut(s)	402, 873
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	3 cut(s)	477, 534, 826
Bsp143I	GATC	4 cut(s)	142, 187, 664, 850
BspACI	CCGC	7 cut(s)	216, 741, 819, 848, 917, 923, 951
BspCNI	CTCAG	3 cut(s)	61, 178, 253
BspDI	ATCGAT	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	661
BspMAI	CTGCAG	3 cut(s)	105, 441, 962
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	858
BspQI	GCTCTTC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	148
BspTNI	GGTCTC	2 cut(s)	402, 873
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	25, 37
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	4 cut(s)	142, 187, 664, 850
Bst2UI	CCWGG	1 cut(s)	884
Bst4CI	ACNGT	3 cut(s)	223, 594, 1044
Bst6I	CTCTTC	5 cut(s)	75, 564, 618, 893, 998
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	726, 730
BstDEI	CTNAG	3 cut(s)	48, 165, 261
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	4 cut(s)	145, 190, 667, 853
BstMAI	GTCTC	2 cut(s)	402, 873
BstMBI	GATC	4 cut(s)	142, 187, 664, 850
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 100, 170, 496, 646, 845, 957
BstNI	CCWGG	1 cut(s)	884
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	882
BstSFI	CTRYAG	4 cut(s)	101, 437, 644, 958
BstV1I	GCAGC	4 cut(s)	252, 508, 765, 944
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
Bsu15I	ATCGAT	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	726, 730
CciI	TCATGA	1 cut(s)	661
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	1 cut(s)	828
CsiI	ACCWGGT	1 cut(s)	882
CviAII	CATG	2 cut(s)	662, 733
DdeI	CTNAG	3 cut(s)	48, 165, 261
DpnI	GATC	4 cut(s)	144, 189, 666, 852
DpnII	GATC	4 cut(s)	142, 187, 664, 850
DriI	GACNNNNNGTC	1 cut(s)	415
Eam1104I	CTCTTC	5 cut(s)	75, 564, 618, 893, 998
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	5 cut(s)	75, 564, 618, 893, 998
EciI	GGCGGA	3 cut(s)	834, 863, 938
Ecl136II	GAGCTC	2 cut(s)	532, 824
Eco24I	GRGCYC	3 cut(s)	477, 534, 826
Eco31I	GGTCTC	2 cut(s)	402, 873
Eco53kI	GAGCTC	2 cut(s)	532, 824
Eco57I	CTGAAG	1 cut(s)	617
EcoICRI	GAGCTC	2 cut(s)	532, 824
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	882
EcoT38I	GRGCYC	3 cut(s)	477, 534, 826
FaeI	CATG	2 cut(s)	665, 736
FalI	AAGNNNNNCTT	4 cut(s)	612, 644, 615, 647
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	2 cut(s)	661, 732
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	1039
Fnu4HI	GCNGC	5 cut(s)	266, 497, 741, 779, 958
FokI	GGATG	1 cut(s)	439
FriOI	GRGCYC	3 cut(s)	477, 534, 826
Fsp4HI	GCNGC	5 cut(s)	266, 497, 741, 779, 958
FspBI	CTAG	4 cut(s)	423, 503, 566, 1047
GluI	GCNGC	5 cut(s)	266, 497, 741, 779, 958
HapII	CCGG	1 cut(s)	827
HgaI	GACGC	1 cut(s)	828
Hin1II	CATG	2 cut(s)	665, 736
HincII	GTYRAC	2 cut(s)	18, 597
HindII	GTYRAC	2 cut(s)	18, 597
HinfI	GANTC	7 cut(s)	125, 251, 326, 433, 707, 716, 785
HpaI	GTTAAC	1 cut(s)	597
HpaII	CCGG	1 cut(s)	827
HphI	GGTGA	2 cut(s)	659, 868
Hpy166II	GTNNAC	3 cut(s)	18, 597, 1040
Hpy188I	TCNGA	6 cut(s)	168, 262, 407, 559, 636, 987
Hpy188III	TCNNGA	2 cut(s)	503, 662
Hpy8I	GTNNAC	3 cut(s)	18, 597, 1040
HpyAV	CCTTC	6 cut(s)	53, 79, 266, 295, 299, 928
HpyCH4III	ACNGT	3 cut(s)	223, 594, 1044
HpyCH4V	TGCA	8 cut(s)	56, 103, 173, 268, 322, 439, 766, 960
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 100, 170, 496, 646, 845, 957
HpyF3I	CTNAG	3 cut(s)	48, 165, 261
Hsp92II	CATG	2 cut(s)	665, 736
Ksp22I	TGATCA	1 cut(s)	664
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	142, 187, 664, 850
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	529, 821, 829
Lsp1109I	GCAGC	4 cut(s)	252, 508, 765, 944
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	882
MaeI	CTAG	4 cut(s)	423, 503, 566, 1047
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	4 cut(s)	144, 189, 666, 852
MboI	GATC	4 cut(s)	142, 187, 664, 850
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	3 cut(s)	477, 534, 826
MluCI	AATT	6 cut(s)	40, 75, 133, 295, 548, 859
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	4 cut(s)	48, 385, 675, 965
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	2 cut(s)	542, 596
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	827
MspR9I	CCNGG	1 cut(s)	884
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	884
MwoI	GCNNNNNNNGC	7 cut(s)	53, 100, 170, 496, 646, 845, 957
NdeII	GATC	4 cut(s)	142, 187, 664, 850
NlaIII	CATG	2 cut(s)	665, 736
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	148
PagI	TCATGA	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	618
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	6 cut(s)	251, 326, 433, 707, 716, 785
PkrI	GCNGC	5 cut(s)	267, 498, 742, 780, 959
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp124BI	GAGCTC	2 cut(s)	534, 826
Psp6I	CCWGG	1 cut(s)	882
PspGI	CCWGG	1 cut(s)	882
PstI	CTGCAG	3 cut(s)	105, 441, 962
PsuI	RGATCY	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	2 cut(s)	534, 826
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	542, 596
SatI	GCNGC	5 cut(s)	266, 497, 741, 779, 958
Sau3AI	GATC	4 cut(s)	142, 187, 664, 850
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	884
SduI	GDGCHC	3 cut(s)	477, 534, 826
SexAI	ACCWGGT	1 cut(s)	882
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	4 cut(s)	101, 437, 644, 958
SfuI	TTCGAA	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	6 cut(s)	40, 75, 133, 295, 548, 859
SsiI	CCGC	7 cut(s)	216, 741, 819, 848, 917, 923, 951
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	4 cut(s)	423, 503, 566, 1047
SstI	GAGCTC	2 cut(s)	534, 826
StyD4I	CCNGG	1 cut(s)	882
TaaI	ACNGT	3 cut(s)	223, 594, 1044
TaqI	TCGA	4 cut(s)	137, 148, 354, 534
TasI	AATT	6 cut(s)	40, 75, 133, 295, 548, 859
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	6 cut(s)	251, 326, 433, 707, 716, 785
Tru1I	TTAA	2 cut(s)	542, 596
Tru9I	TTAA	2 cut(s)	542, 596
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	4 cut(s)	265, 496, 778, 957
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	5 cut(s)	302, 318, 384, 443, 650
TspGWI	ACGGA	1 cut(s)	805
XapI	RAATTY	5 cut(s)	40, 133, 295, 548, 859
XbaI	TCTAGA	1 cut(s)	502
XceI	RCATGY	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	1039
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	4 cut(s)	423, 503, 566, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.