FvH4_6g40890

Protein of unknown function (DUF423)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002952
Physical Location & Seq
Forward (+)
32305911 .. 32307897
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40890.t1

Sequence Viewer

Length: 336 bp
ATGAATCCTATGCTGTGGCACAAAGTAGCTGCAGTCTCTGGAATGGCTGCTCTTGGGTTGGGCTCATATGGTGCCCATGGCTTTAAACCCCAAAACCCAGTTTACAAAGAGGTTTGGCAAACGGCTTCTCTGTACCATTTGGTTCACACAGCAGCTCTGCTTGCCGCCCCTCTCACAAAAAATCCCACTATTTTTGGAGGCCTTTTAACTACTGGTATACTCGCATTCTCGGGGACGTGTTATACTGTGGCATTACTCGAAGATAGGAAGTACAATAAATTGGCTCCTTTTGGTGGCGTTGCTTTCATTGCTGCTTGGGCTAGCTTACTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF423

Protein Analysis

112

Amino Acids

11.84

Weight (kDa)

9.42

Isoelectric Point (pI)

20.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF423 PF04241 20 - 99 2.5e-23 Protein of unknown function (DUF423)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 217
AciI CCGC 1 cut(s) 165
AfaI GTAC 2 cut(s) 134, 272
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 236
AjiI CACGTC 1 cut(s) 237
AluBI AGCT 3 cut(s) 29, 155, 324
AluI AGCT 3 cut(s) 29, 155, 324
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 4 cut(s) 29, 47, 152, 311
AsuNHI GCTAGC 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 16, 34, 164, 298
BceAI ACGGC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 5 cut(s) 30, 48, 153, 165, 312
BlsI GCNGC 5 cut(s) 31, 49, 154, 166, 313
BmeT110I CYCGRG 1 cut(s) 229
BmgBI CACGTC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 73, 285
BmrI ACTGGG 1 cut(s) 92
BmtI GCTAGC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 98, 217
Bse3DI GCAATG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 98, 217
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 4 cut(s) 16, 34, 164, 298
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 65, 76
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 73, 285
BspMAI CTGCAG 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 2 cut(s) 98, 217
BssECI CCNNGG 1 cut(s) 76
BssNAI GTATAC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 162, 322
BstDSI CCRYGG 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 40
BstMWI GCNNNNNNNGC 3 cut(s) 161, 308, 317
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 4 cut(s) 16, 34, 164, 298
BstZ17I GTATAC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 76
BtrI CACGTC 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 162, 322
CaiI CAGNNNCTG 1 cut(s) 38
Csp6I GTAC 2 cut(s) 133, 271
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 77
CviQI GTAC 2 cut(s) 133, 271
DraI TTTAAA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 80
FaiI YATR 6 cut(s) 11, 67, 69, 78, 218, 243
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 76
FauNDI CATATG 1 cut(s) 67
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 5 cut(s) 30, 48, 153, 165, 312
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 5 cut(s) 30, 48, 153, 165, 312
FspBI CTAG 1 cut(s) 321
GluI GCNGC 5 cut(s) 30, 48, 153, 165, 312
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 3 cut(s) 103, 145, 218
Hpy188III TCNNGA 1 cut(s) 39
Hpy8I GTNNAC 3 cut(s) 103, 145, 218
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 308, 317
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 80
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 3 cut(s) 24, 111, 198
Lsp1109I GCAGC 4 cut(s) 16, 34, 164, 298
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 236
MboII GAAGA 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 65, 76
MluCI AATT 1 cut(s) 278
MnlI CCTC 3 cut(s) 103, 180, 191
MseI TTAA 2 cut(s) 84, 206
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 161, 308, 317
NcoI CCATGG 1 cut(s) 76
NdeI CATATG 1 cut(s) 67
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 73, 285
PceI AGGCCT 1 cut(s) 201
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 5 cut(s) 31, 49, 154, 166, 313
PspN4I GGNNCC 2 cut(s) 73, 285
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 134, 272
RsaNI GTAC 2 cut(s) 133, 271
SaqAI TTAA 2 cut(s) 84, 206
SatI GCNGC 5 cut(s) 30, 48, 153, 165, 312
SduI GDGCHC 2 cut(s) 65, 76
SetI ASST 5 cut(s) 31, 114, 157, 239, 326
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 1 cut(s) 278
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 321
StuI AGGCCT 1 cut(s) 201
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 278
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 84, 206
Tru9I TTAA 2 cut(s) 84, 206
TseI GCWGC 4 cut(s) 29, 47, 152, 311
TspDTI ATGAA 2 cut(s) 17, 295
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.