Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Reverse (-)

64669850 .. 64674599

Gene Structure 4750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGAAGAACTACCAAGAAAGAAATTCCCAGATCAAAACACTTCATCATCAAATACTTGGAAAATGAGGATCAGCAAATAGAAACTATTTATGCTGCAGAGTTTCTGAAAACATTCCAAACTTTGCCAACATTTGGGAACCTCAAGCAATTGAACTTGGACCTCCTTTCATACCAAAGTAAAAGTAAGGAAGGTGTCAAGCTTAATGATGCTTTAGAGAAGTTAGGAAGAAGTTTGTTACAGGAGCTTCTGTTGTTAAGTGTGTCAAACTTGATTGGCTTGCACTTCATCCAGATTCTCATATTGCTTCATCCTCCATGGCATATTAACAAGCAATGGGAAGATTTGCTTCGATCAGAGTTTGTTCACGTTTTTAGATTTGGTACTATTGGTACCAAAGATGAAAATTCCAACAAGAAGAGAATTACATTATCAAAACTAAACTTACTGATGAGCATGTTCAAGGCTTTTTGCCTTTTGGATACTTCTTTTCCTTGGGATTCTTCTCTCACCAGCGTCTTCATTAGGCAGCCAAAGAGTAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N PH Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

183

Amino Acids

21.22

Weight (kDa)

9.55

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	541
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	24, 406
AfaI	GTAC	2 cut(s)	385, 394
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	154, 463
AluBI	AGCT	2 cut(s)	202, 247
AluI	AGCT	2 cut(s)	202, 247
AlwI	GGATC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	95, 529
ApoI	RAATTY	2 cut(s)	24, 406
Asp700I	GAANNNNTTC	1 cut(s)	113
Asp718I	GGTACC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	82, 541
BciVI	GTATCC	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	2 cut(s)	96, 530
BlsI	GCNGC	2 cut(s)	97, 531
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	140, 394
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	317, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	317, 494
BseGI	GGATG	2 cut(s)	288, 310
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	82, 541
BshNI	GGYRCC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	32, 70, 353
Bsp19I	CCATGG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	140, 394
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	317, 494
BssMI	GATC	3 cut(s)	32, 70, 353
BssT1I	CCWWGG	2 cut(s)	317, 494
Bst6I	CTCTTC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	288, 310
BstKTI	GATC	3 cut(s)	35, 73, 356
BstMBI	GATC	3 cut(s)	32, 70, 353
BstNSI	RCATGY	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	82, 541
BstV2I	GAAGAC	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	475
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	288, 310
Cac8I	GCNNGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	384, 393
CviAII	CATG	2 cut(s)	318, 457
CviJI	RGCY	5 cut(s)	202, 247, 279, 467, 532
CviKI_1	RGCY	5 cut(s)	202, 247, 279, 467, 532
CviQI	GTAC	2 cut(s)	384, 393
DpnI	GATC	3 cut(s)	34, 72, 355
DpnII	GATC	3 cut(s)	32, 70, 353
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	317, 494
Eco47I	GGWCC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	317, 494
ErhI	CCWWGG	2 cut(s)	317, 494
FaeI	CATG	2 cut(s)	321, 460
FaiI	YATR	6 cut(s)	93, 172, 302, 319, 324, 458
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	2 cut(s)	317, 456
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	96, 530
FokI	GGATG	2 cut(s)	275, 297
Fsp4HI	GCNGC	2 cut(s)	96, 530
GluI	GCNGC	2 cut(s)	96, 530
HgaI	GACGC	1 cut(s)	505
Hin1II	CATG	2 cut(s)	321, 460
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	295, 500
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	367, 542
Hpy188I	TCNGA	2 cut(s)	108, 358
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	367, 542
HpyAV	CCTTC	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	98, 283
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	321, 460
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	32, 70, 353
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	4 cut(s)	43, 227, 305, 526
Lsp1109I	GCAGC	2 cut(s)	82, 541
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	3 cut(s)	34, 72, 355
MboI	GATC	3 cut(s)	32, 70, 353
MboII	GAAGA	6 cut(s)	18, 240, 353, 430, 495, 511
MfeI	CAATTG	1 cut(s)	149
MluCI	AATT	4 cut(s)	24, 149, 406, 423
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	4 cut(s)	61, 152, 173, 324
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	3 cut(s)	204, 257, 327
MunI	CAATTG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	3 cut(s)	32, 70, 353
NlaIII	CATG	2 cut(s)	321, 460
NlaIV	GGNNCC	2 cut(s)	140, 394
NspI	RCATGY	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	295, 500
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	97, 531
PspN4I	GGNNCC	2 cut(s)	140, 394
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	100
RsaI	GTAC	2 cut(s)	385, 394
RsaNI	GTAC	2 cut(s)	384, 393
SaqAI	TTAA	3 cut(s)	204, 257, 327
SatI	GCNGC	2 cut(s)	96, 530
Sau3AI	GATC	3 cut(s)	32, 70, 353
Sau96I	GGNCC	1 cut(s)	160
SetI	ASST	6 cut(s)	144, 165, 196, 204, 249, 372
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	24, 149, 406, 423
StyI	CCWWGG	2 cut(s)	317, 494
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	352
TasI	AATT	4 cut(s)	24, 149, 406, 423
TfiI	GAWTC	2 cut(s)	295, 500
Tru1I	TTAA	3 cut(s)	204, 257, 327
Tru9I	TTAA	3 cut(s)	204, 257, 327
TseI	GCWGC	2 cut(s)	95, 529
TspDTI	ATGAA	6 cut(s)	34, 159, 277, 299, 417, 511
Van91I	CCANNNNNTGG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	24, 406
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.