Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005392.1

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Reverse (-)

79631 .. 81093

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005392.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgaatcctatattatggcaaaaagtagctgcagtctctggaatggcagctcttggtttgggcgcatacggtgcccatggctttaaaccccaaaacccagtttacaaagaggtttggcaaacggcttctctgtaccatttggttcacacagcagctctgcttgctgcccctctcacaaaaaaccccaatatttttggaagccttttaactaccggtatactcgcattctcggggacgtgttatactgtggcattactcgaagataggaagtacaatagattggctccttttggtggcgttgctttcatcgctgcttgggctagcttactattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF423

Protein Analysis

111

Amino Acids

11.87

Weight (kDa)

9.46

Isoelectric Point (pI)

19.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	217
AfaI	GTAC	2 cut(s)	134, 272
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	236
AgeI	ACCGGT	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	237
AluBI	AGCT	4 cut(s)	29, 50, 155, 324
AluI	AGCT	4 cut(s)	29, 50, 155, 324
Alw26I	GTCTC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	229
ApeKI	GCWGC	5 cut(s)	29, 47, 152, 164, 311
AsiGI	ACCGGT	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	5 cut(s)	16, 59, 151, 164, 298
BceAI	ACGGC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	5 cut(s)	30, 48, 153, 165, 312
BlsI	GCNGC	5 cut(s)	31, 49, 154, 166, 313
BmeT110I	CYCGRG	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	73, 285
BmrI	ACTGGG	1 cut(s)	92
BmtI	GCTAGC	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	5 cut(s)	16, 59, 151, 164, 298
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	73, 285
BspMAI	CTGCAG	1 cut(s)	34
BspOI	GCTAGC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	76
BssNAI	GTATAC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	71, 247
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	162, 322
BstDSI	CCRYGG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	65
BstMAI	GTCTC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 161, 308, 317
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	5 cut(s)	16, 59, 151, 164, 298
BstZ17I	GTATAC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	162, 322
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	133, 271
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	9 cut(s)	29, 50, 81, 125, 155, 201, 284, 320, 324
CviKI_1	RGCY	9 cut(s)	29, 50, 81, 125, 155, 201, 284, 320, 324
CviQI	GTAC	2 cut(s)	133, 271
DraI	TTTAAA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	80
FaiI	YATR	6 cut(s)	11, 16, 67, 78, 218, 243
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	5 cut(s)	30, 48, 153, 165, 312
Fsp4HI	GCNGC	5 cut(s)	30, 48, 153, 165, 312
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	5 cut(s)	30, 48, 153, 165, 312
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	213
Hpy166II	GTNNAC	3 cut(s)	103, 145, 218
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	3 cut(s)	103, 145, 218
HpyCH4III	ACNGT	2 cut(s)	71, 247
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 161, 308, 317
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	3 cut(s)	24, 111, 226
Lsp1109I	GCAGC	5 cut(s)	16, 59, 151, 164, 298
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	236
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	76
MnlI	CCTC	2 cut(s)	103, 180
MseI	TTAA	2 cut(s)	84, 206
MspI	CCGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	71, 161, 308, 317
NcoI	CCATGG	1 cut(s)	76
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	73, 285
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	4
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	31, 49, 154, 166, 313
PspN4I	GGNNCC	2 cut(s)	73, 285
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	134, 272
RsaNI	GTAC	2 cut(s)	133, 271
SaqAI	TTAA	2 cut(s)	84, 206
SatI	GCNGC	5 cut(s)	30, 48, 153, 165, 312
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	6 cut(s)	31, 52, 114, 157, 239, 326
SfcI	CTRYAG	1 cut(s)	30
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	71, 247
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	258
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	84, 206
Tru9I	TTAA	2 cut(s)	84, 206
TseI	GCWGC	5 cut(s)	29, 47, 152, 164, 311
TspDTI	ATGAA	2 cut(s)	17, 295
XmiI	GTMKAC	1 cut(s)	217
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.