Rorug05G0540700

Protein of unknown function (DUF423)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002952
Physical Location & Seq
Forward (+)
72914580 .. 72917160
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0540700.1

Sequence Viewer

Length: 1080 bp
ATGGCAAAAGATATGACTGATTCGTCGTCCTGGGTTCGCCTCAATGTCGGAGGAAAACTTTTCTGCACTACTATTGGTACACTGACTCTCCGCGAGCCTGATTCAATGCTTGCTGCAATGTTTAGTGGTCGTCACACTTTGAAGCATGAAGATGGATATGTTTTGATTGACAGAGATGGTGATTATTTTGGGTATATTCTTAATTGGTTAAGAGATGGCGATGTTCCTGCTTTAGAAGCTCATACATACAAACAACTTCTAAAAGAGGCAGAATACTTCCAGCTAAGTGGTCTAATAGATGGAATACAGGTCAGTGACTTTACTCGTATTGAGGTCATAAAATGTATACAATCGCCAGAGAGAAGGTTTCGAGGTGTTAATCTTTCTGGCCTCGATCTATCGAAACTGAACTTGTCAGGGATAGACTTCAGCTGTGCATGTGTGCGAAATGTATCCTTCTCACGTGCAAACCTTTTTAGGGCTAACTTTGGGAAGGCAGATATTGAGGGTGCCACATTTTGTGATTCAGATTTGCGAGAAAGTGTATTTATTGAAGCAAAAATTGGTGGAGTCTCTTTTGTTGGTGCAAATCTTGAACACACAAATTTCAGTTGTGCGAATCTTGAGGGTGCCACATTTTGTGATTCAGATTTGCGAGGAAGTGTATTTACTGAAGCAAAAATTGGTGGAGTCTCTTTTGTTGGTGCAAATCTTGGTGCAAATTTAAGAGACACAAATTTCAGTCGTGCGAATCTTGAACGCACAAATTTCAGTCGTGCCAATCTTTCAGGTGCAGTCCATAAGGGTGCTTTCTCGGGGGATTATACTCGGCGTGTCATATTTGACAATGCAACTTTGGAAAAATGTGAATTTGTCAAGTCAAATATCCGGGAAGCTTCTTTAACAAGTGCACGTTTAATCAATTGCAGCTTTGTTGAGGCAGACTTGAGTAATGCAAATCTTCAAGATGCTGATGTTACAAATACTGACTTAGAGGGGGCCATACTGAAACAAGCCAATATGGAGGGTATCAAGTTGAGTAATACTAATTTGAAAGGTGCAAACCTTGTAAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF423

Protein Analysis

359

Amino Acids

39.24

Weight (kDa)

5.4

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 5.5e-17 BTB/POZ domain
Pentapeptide_4 PF13599 122 - 193 1.8e-06 Pentapeptide repeat region
Pentapeptide PF00805 123 - 158 8.1e-06 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 156 - 233 4.9e-11 Pentapeptide repeat region
Pentapeptide_4 PF13599 190 - 265 2.2e-09 Pentapeptide repeat region
Pentapeptide PF00805 202 - 238 5.5e-08 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 239 - 265 1.3e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 280 - 356 1.6e-12 Pentapeptide repeat region
Pentapeptide PF00805 294 - 333 8.9e-10 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 327 - 359 3.4e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccB1I GGYRCC 2 cut(s) 509, 629
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 91
AcsI RAATTY 5 cut(s) 604, 721, 736, 766, 869
AcuI CTGAAG 2 cut(s) 412, 693
AcvI CACGTG 1 cut(s) 464
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 7 cut(s) 105, 142, 554, 596, 758, 965, 1054
AjnI CCWGG 1 cut(s) 29
AjuI GAANNNNNNNTTGG 4 cut(s) 546, 578, 666, 698
AluBI AGCT 5 cut(s) 239, 283, 432, 896, 930
AluI AGCT 5 cut(s) 239, 283, 432, 896, 930
Alw21I GWGCWC 1 cut(s) 913
Alw26I GTCTC 3 cut(s) 577, 697, 723
Alw44I GTGCAC 1 cut(s) 909
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 2 cut(s) 388, 999
ApaLI GTGCAC 1 cut(s) 909
ApeKI GCWGC 2 cut(s) 113, 927
ApoI RAATTY 5 cut(s) 604, 721, 736, 766, 869
AspS9I GGNCC 1 cut(s) 999
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 913
BanI GGYRCC 2 cut(s) 509, 629
BarI GAAGNNNNNNTAC 2 cut(s) 652, 684
BbrPI CACGTG 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 913
BbvI GCAGC 2 cut(s) 100, 939
BccI CCATC 4 cut(s) 146, 170, 209, 293
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 31
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 577, 697, 723
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 2 cut(s) 114, 928
BlsI GCNGC 2 cut(s) 115, 929
Bme1390I CCNGG 2 cut(s) 31, 890
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 999
BmiI GGNNCC 3 cut(s) 511, 631, 1000
BmrFI CCNGG 2 cut(s) 31, 890
BmsI GCATC 1 cut(s) 958
BpuEI CTTGAG 2 cut(s) 644, 967
BpuMI CCSGG 1 cut(s) 890
BsaAI YACGTR 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 2 cut(s) 100, 939
BsgI GTGCAG 2 cut(s) 49, 813
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 390, 1001
BshNI GGYRCC 2 cut(s) 509, 629
BsiHKAI GWGCWC 1 cut(s) 913
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 1 cut(s) 889
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 3 cut(s) 577, 697, 723
BsnI GGCC 2 cut(s) 390, 1001
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 913
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 390, 1001
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 511, 631, 1000
BspT107I GGYRCC 2 cut(s) 509, 629
BsrDI GCAATG 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 394
BssNAI GTATAC 1 cut(s) 347
Bst1107I GTATAC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 95, 111
BstDEI CTNAG 3 cut(s) 284, 991, 1077
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 3 cut(s) 577, 697, 723
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 2 cut(s) 29, 888
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 100, 939
BstXI CCANNNNNNTGG 1 cut(s) 287
BstZ17I GTATAC 1 cut(s) 347
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 390, 1001
BtgZI GCGATG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 80, 319
Cac8I GCNNGC 2 cut(s) 95, 111
Cfr13I GGNCC 1 cut(s) 999
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 146, 438
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 284, 991, 1077
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 412, 693
Eco72I CACGTG 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 2 cut(s) 149, 441
FatI CATG 2 cut(s) 145, 437
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 114, 928
Fsp4HI GCNGC 2 cut(s) 114, 928
GluI GCNGC 2 cut(s) 114, 928
HaeIII GGCC 2 cut(s) 390, 1001
HapII CCGG 1 cut(s) 889
Hin1II CATG 2 cut(s) 149, 441
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 9 cut(s) 20, 85, 101, 524, 570, 619, 644, 690, 751
HpaII CCGG 1 cut(s) 889
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 3 cut(s) 80, 347, 911
Hpy188I TCNGA 3 cut(s) 50, 529, 649
Hpy188III TCNNGA 4 cut(s) 593, 623, 755, 965
Hpy8I GTNNAC 3 cut(s) 80, 347, 911
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 357, 466, 487
HpyCH4IV ACGT 2 cut(s) 463, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 284, 991, 1077
HpySE526I ACGT 2 cut(s) 463, 913
Hsp92II CATG 2 cut(s) 149, 441
Kzo9I GATC 1 cut(s) 394
Lsp1109I GCAGC 2 cut(s) 100, 939
LweI GCATC 1 cut(s) 958
MaeII ACGT 2 cut(s) 463, 913
MaeIII GTNAC 3 cut(s) 131, 314, 976
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 2 cut(s) 161, 953
MfeI CAATTG 1 cut(s) 922
MhlI GDGCHC 1 cut(s) 913
MlyI GAGTC 3 cut(s) 79, 579, 699
MmeI TCCRAC 1 cut(s) 28
MseI TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
MslI CAYNNNNRTG 2 cut(s) 150, 804
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 2 cut(s) 31, 890
MunI CAATTG 1 cut(s) 922
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 890
NdeII GATC 1 cut(s) 394
NlaIII CATG 2 cut(s) 149, 441
NlaIV GGNNCC 3 cut(s) 511, 631, 1000
NmeAIII GCCGAG 1 cut(s) 808
NmuCI GTSAC 2 cut(s) 131, 314
NspI RCATGY 1 cut(s) 441
PfeI GAWTC 6 cut(s) 20, 101, 524, 619, 644, 751
PfoI TCCNGGA 1 cut(s) 888
PkrI GCNGC 2 cut(s) 115, 929
PleI GAGTC 3 cut(s) 79, 578, 698
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
PpsI GAGTC 3 cut(s) 79, 578, 698
Ppu21I YACGTR 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 29
PspCI CACGTG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 3 cut(s) 511, 631, 1000
PspPI GGNCC 1 cut(s) 999
PvuII CAGCTG 1 cut(s) 432
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 2 cut(s) 150, 804
SaqAI TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
SatI GCNGC 2 cut(s) 114, 928
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 999
SchI GAGTC 3 cut(s) 79, 579, 699
ScrFI CCNGG 2 cut(s) 31, 890
SduI GDGCHC 1 cut(s) 913
SfaNI GCATC 1 cut(s) 958
SmiMI CAYNNNNRTG 2 cut(s) 150, 804
SmlI CTYRAG 2 cut(s) 623, 946
SmoI CTYRAG 2 cut(s) 623, 946
SsiI CCGC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 29, 888
TaiI ACGT 2 cut(s) 466, 916
TaqI TCGA 3 cut(s) 370, 393, 401
TfiI GAWTC 6 cut(s) 20, 101, 524, 619, 644, 751
Tru1I TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
Tru9I TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
TscAI CASTG 2 cut(s) 87, 319
TseFI GTSAC 2 cut(s) 131, 314
TseI GCWGC 2 cut(s) 113, 927
Tsp45I GTSAC 2 cut(s) 131, 314
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 2 cut(s) 87, 319
VneI GTGCAC 1 cut(s) 909
XapI RAATTY 5 cut(s) 604, 721, 736, 766, 869
XceI RCATGY 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.