Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Reverse (-)

56353193 .. 56354012

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG430300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAAAATCTCTCTCCCTAGTTCTATTGTTGAGAGAACAGCTCCTGTTGTCGACAATGCTGAGAACTGGAGCCAAGGGGAAGAGAAGCATTTGGGTCTAGGTTTTGATCAGGTGGTTGTGCACAAACTTCTATTGTTTTCATTAGATGATCCTCATCGGAAAATATGTACAGTAATGAGTATGGCTGTAGCATCAATAGCAAGTTATTTTGGGCACAACGTTGATGATTTCACTGCTGTACAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017038 GO:0019899 GO:0022613 GO:0031267 GO:0031647 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042254 GO:0042393 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050821 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

82

Amino Acids

9.06

Weight (kDa)

5.34

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	169, 240
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw21I	GWGCWC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	44
ApaLI	GTGCAC	1 cut(s)	119
BaeGI	GKGCMC	2 cut(s)	123, 216
Bbv12I	GWGCWC	1 cut(s)	123
BclI	TGATCA	1 cut(s)	106
BfaI	CTAG	2 cut(s)	18, 98
BfmI	CTRYAG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	71
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	123, 216
BsiHKAI	GWGCWC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	123, 216
Bsp1407I	TGTACA	2 cut(s)	167, 238
Bsp143I	GATC	2 cut(s)	106, 148
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	143
BsrGI	TGTACA	2 cut(s)	167, 238
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	106, 148
BssT1I	CCWWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	75
BstAUI	TGTACA	2 cut(s)	167, 238
BstDEI	CTNAG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	109, 151
BstMBI	GATC	2 cut(s)	106, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	2 cut(s)	123, 216
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	168, 239
CviJI	RGCY	3 cut(s)	41, 72, 185
CviKI_1	RGCY	3 cut(s)	41, 72, 185
CviQI	GTAC	2 cut(s)	168, 239
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	108, 150
DpnII	GATC	2 cut(s)	106, 148
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaiI	YATR	2 cut(s)	166, 182
FbaI	TGATCA	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	18, 98
GsuI	CTGGAG	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	52, 121
Hpy188I	TCNGA	2 cut(s)	159, 248
Hpy8I	GTNNAC	2 cut(s)	52, 121
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	106, 148
LmnI	GCTCC	2 cut(s)	46, 69
LpnPI	CCDG	3 cut(s)	52, 57, 95
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	18, 98
MaeII	ACGT	1 cut(s)	219
MalI	GATC	2 cut(s)	108, 150
MboI	GATC	2 cut(s)	106, 148
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	123, 216
MnlI	CCTC	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	106, 148
NlaIV	GGNNCC	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	169, 240
RsaNI	GTAC	2 cut(s)	168, 239
SalI	GTCGAC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	106, 148
SduI	GDGCHC	2 cut(s)	123, 216
SetI	ASST	4 cut(s)	43, 103, 114, 222
SfaNI	GCATC	1 cut(s)	200
SfcI	CTRYAG	1 cut(s)	186
SgeI	CNNG	7 cut(s)	30, 56, 79, 86, 110, 122, 213
SspMI	CTAG	2 cut(s)	18, 98
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	51
TatI	WGTACW	2 cut(s)	167, 238
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	17, 129
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	2 cut(s)	18, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.