Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Forward (+)

20630091 .. 20650239

Gene Structure 20149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG110000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAAAAAAGCTTAGCTTCTGGTACTAGAAGACCAGAAGCCATATGCAGGTACAAACAAGCTTTCGCAAATCCTGCAAATCCACTTCAAAGATATGGGTCCAAAGAAATGGACAAGAACAAAAAGACTGTTAGAAGACAGTTATTGTCAAAATCGTATAATGAAAGGGAAATGCAAGCAATTCCTATTTCTAATACTGCTGAAGAGCAGGAAAGTCATTTTACCGGATCAAGCCGTGGTACATATTCGAAGACAAAATGGACAAGAACAAAAACATTGTTAGAAGACAGTCATTGTCAAAACGATAATGATGAAATAGAAATGCAAGGAATTCCTGTTTGTGATAGCAGTGAAGAACATAAAGTTCATTTTAGCAGATCAAGCCGTGGTAAGATTCAATTGGTGATGTCAAAAGAGAATCAATGTTTAAAACATCAGCAGAATTCCGAAAGTTATAGCACTACCAAATTTAACCATACTCCCAAGCGATTCAGAACTAGGGAACAAAGCTCAGGAACATCACAAAAAACATTCCTAACTCTGCCAACATTTGGGAATCTCAAGCAATTGAACTTGGACCTCCTTTCATACCAAAGTAAAAGTAAGGAAGAAGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.79

Weight (kDa)

9.47

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	551
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	3 cut(s)	330, 442, 467
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	25, 53, 241
AfiI	CCNNNNNNNGG	2 cut(s)	48, 551
AgsI	TTSAA	3 cut(s)	89, 398, 571
AluBI	AGCT	4 cut(s)	12, 17, 62, 510
AluI	AGCT	4 cut(s)	12, 17, 62, 510
AlwI	GGATC	1 cut(s)	235
ApoI	RAATTY	3 cut(s)	330, 442, 467
AspS9I	GGNCC	2 cut(s)	99, 577
AsuHPI	GGTGA	1 cut(s)	415
AsuII	TTCGAA	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	99, 577
BbsI	GAAGAC	4 cut(s)	37, 142, 257, 291
BceAI	ACGGC	2 cut(s)	219, 369
BfaI	CTAG	2 cut(s)	27, 498
BfuAI	ACCTGC	1 cut(s)	39
BlpI	GCTNAGC	1 cut(s)	13
Bme18I	GGWCC	2 cut(s)	99, 577
BmgT120I	GGNCC	2 cut(s)	99, 577
BmiI	GGNNCC	1 cut(s)	100
BpiI	GAAGAC	4 cut(s)	37, 142, 257, 291
Bpu10I	CCTNAGC	1 cut(s)	511
Bpu1102I	GCTNAGC	1 cut(s)	13
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	235, 385
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 551
BseDI	CCNNGG	2 cut(s)	235, 385
BseLI	CCNNNNNNNGG	2 cut(s)	48, 551
BseMII	CTCAG	1 cut(s)	525
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	48, 551
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	227, 377
Bsp1720I	GCTNAGC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	524
BspLI	GGNNCC	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	235, 385
BssMI	GATC	2 cut(s)	227, 377
Bst4CI	ACNGT	3 cut(s)	130, 141, 290
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	13, 511
BstDSI	CCRYGG	2 cut(s)	235, 385
BstKTI	GATC	2 cut(s)	230, 380
BstMBI	GATC	2 cut(s)	227, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 381
BstV2I	GAAGAC	4 cut(s)	37, 142, 257, 291
BstXI	CCANNNNNNTGG	1 cut(s)	109
BtgI	CCRYGG	2 cut(s)	235, 385
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	355
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	99, 577
Csp6I	GTAC	3 cut(s)	24, 52, 240
CviJI	RGCY	7 cut(s)	12, 17, 41, 62, 234, 384, 510
CviKI_1	RGCY	7 cut(s)	12, 17, 41, 62, 234, 384, 510
CviQI	GTAC	3 cut(s)	24, 52, 240
DdeI	CTNAG	2 cut(s)	13, 511
DpnI	GATC	2 cut(s)	229, 379
DpnII	GATC	2 cut(s)	227, 377
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	99, 577
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	2 cut(s)	330, 442
FalI	AAGNNNNNCTT	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	44
FspBI	CTAG	2 cut(s)	27, 498
HapII	CCGG	1 cut(s)	225
HindIII	AAGCTT	2 cut(s)	10, 60
HinfI	GANTC	4 cut(s)	394, 418, 489, 556
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	448, 494
Hpy188III	TCNNGA	1 cut(s)	513
HpyCH4III	ACNGT	3 cut(s)	130, 141, 290
HpyCH4V	TGCA	5 cut(s)	4, 48, 77, 175, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 381
HpyF3I	CTNAG	2 cut(s)	13, 511
Kzo9I	GATC	2 cut(s)	227, 377
LguI	GCTCTTC	1 cut(s)	198
LpnPI	CCDG	8 cut(s)	6, 34, 48, 87, 194, 238, 348, 498
MaeI	CTAG	2 cut(s)	27, 498
MalI	GATC	2 cut(s)	229, 379
MboI	GATC	2 cut(s)	227, 377
MboII	GAAGA	7 cut(s)	42, 147, 215, 262, 296, 365, 620
MfeI	CAATTG	2 cut(s)	398, 566
MluCI	AATT	6 cut(s)	180, 330, 398, 442, 467, 566
MnlI	CCTC	1 cut(s)	590
MseI	TTAA	2 cut(s)	428, 471
MspI	CCGG	1 cut(s)	225
MunI	CAATTG	2 cut(s)	398, 566
MwoI	GCNNNNNNNGC	2 cut(s)	74, 381
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	2 cut(s)	227, 377
NlaIV	GGNNCC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	394, 418, 489, 556
PflMI	CCANNNNNTGG	1 cut(s)	551
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	99, 577
RsaI	GTAC	3 cut(s)	25, 53, 241
RsaNI	GTAC	3 cut(s)	24, 52, 240
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	428, 471
Sau3AI	GATC	2 cut(s)	227, 377
Sau96I	GGNCC	2 cut(s)	99, 577
SetI	ASST	6 cut(s)	14, 19, 53, 64, 512, 582
SfuI	TTCGAA	1 cut(s)	248
SinI	GGWCC	2 cut(s)	99, 577
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	6 cut(s)	180, 330, 398, 442, 467, 566
SspMI	CTAG	2 cut(s)	27, 498
TaaI	ACNGT	3 cut(s)	130, 141, 290
TaqI	TCGA	1 cut(s)	248
TasI	AATT	6 cut(s)	180, 330, 398, 442, 467, 566
TfiI	GAWTC	4 cut(s)	394, 418, 489, 556
Tru1I	TTAA	2 cut(s)	428, 471
Tru9I	TTAA	2 cut(s)	428, 471
TscAI	CASTG	1 cut(s)	355
TspDTI	ATGAA	4 cut(s)	177, 327, 356, 576
TspRI	CASTG	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	99, 577
XapI	RAATTY	3 cut(s)	330, 442, 467
XspI	CTAG	2 cut(s)	27, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.