Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Forward (+)

20925051 .. 20927351

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATCCTCTACTGTGGCATAAAATAGCTGGGCTCTCTGGAATGGCAGCTCTGGGGTTGGGCACATATGGTGCCCATGGCTTCAAACCCGAAAACCCAACTTACAAAGATGTTTGGCAAACGGCGTCTCTCTACCATTTGGTTCACACAGCCGCTCTGGTTGCTGCCCCTATCACGAAGCACCCCAACATTTTTGGAGGCCTTTTGACTACTGGAATACTTGCATTCTCAGGGACGTGTTATACTGTGGCATTACTTGAGGATAGAAAGTATTCTACGTTGGCTCCTTTCGGTGGCTTTGCTTTTATCGCTGCTTGGGCTAGCTTGCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF423

Protein Analysis

112

Amino Acids

11.85

Weight (kDa)

7.93

Isoelectric Point (pI)

21.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	155
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	237
AluBI	AGCT	3 cut(s)	29, 50, 324
AluI	AGCT	3 cut(s)	29, 50, 324
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	47, 164, 311
Asp700I	GAANNNNTTC	1 cut(s)	271
AsuNHI	GCTAGC	1 cut(s)	320
BaeGI	GKGCMC	2 cut(s)	65, 76
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	59, 151, 298
BceAI	ACGGC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	4 cut(s)	48, 153, 165, 312
BlsI	GCNGC	4 cut(s)	49, 154, 166, 313
BmgBI	CACGTC	1 cut(s)	237
BmiI	GGNNCC	3 cut(s)	6, 73, 285
BmtI	GCTAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	2 cut(s)	65, 76
BseXI	GCAGC	3 cut(s)	59, 151, 298
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	36, 65, 76
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	3 cut(s)	6, 73, 285
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	15, 247
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	322, 326
BstDEI	CTNAG	1 cut(s)	229
BstDSI	CCRYGG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 308, 317
BstSLI	GKGCMC	2 cut(s)	65, 76
BstV1I	GCAGC	3 cut(s)	59, 151, 298
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	322, 326
CseI	GACGC	1 cut(s)	114
CviAII	CATG	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	80
FaiI	YATR	5 cut(s)	21, 67, 69, 78, 243
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	48, 153, 165, 312
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	4 cut(s)	48, 153, 165, 312
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	4 cut(s)	48, 153, 165, 312
GsaI	CCCAGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	201
HgaI	GACGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	39, 175
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	15, 247
HpyCH4IV	ACGT	2 cut(s)	236, 278
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 308, 317
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	2 cut(s)	236, 278
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	6 cut(s)	15, 24, 38, 143, 198, 216
Lsp1109I	GCAGC	3 cut(s)	59, 151, 298
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	236, 278
MalI	GATC	1 cut(s)	6
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	36, 65, 76
MnlI	CCTC	3 cut(s)	18, 191, 253
MroXI	GAANNNNTTC	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	161, 308, 317
NcoI	CCATGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	3 cut(s)	6, 73, 285
PceI	AGGCCT	1 cut(s)	201
PctI	GAATGC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	49, 154, 166, 313
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	3 cut(s)	6, 73, 285
PsuI	RGATCY	1 cut(s)	4
SatI	GCNGC	4 cut(s)	48, 153, 165, 312
Sau3AI	GATC	1 cut(s)	4
SduI	GDGCHC	3 cut(s)	36, 65, 76
SetI	ASST	5 cut(s)	31, 52, 239, 281, 326
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	15, 247
TaiI	ACGT	2 cut(s)	239, 281
TauI	GCSGC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	47, 164, 311
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.