Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Reverse (-)

3528441 .. 3529611

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTATAAATCTCATCATCCACGTAGTGCATGGAATTTTGAAACATATTTACTAAGTGAGAGAGGCACTGAAACAGAAGCAAGAGAAGCAACAACAATGGATCTTCAGCTGTGGCATAAAGCAGCGGCGCTCTCTGGAATTGCAGCTGTTGGGTTGGGTACATACGGCGCCCTTGGCTTCAAACCCAAAGACCCAACTTACAAAGAGGTTTGGCTGACGGCGTCTCTGTACCATTTGGTTCACACAGCAGCTCTGCTTGCTGCCCCCATCGCGAAACACCCCACCCTTTTTGGAGGCCTTTTGGCTGCTGGAATACTCGCATTATCCGGGACGTATTATTTTGTGGCATTACTTGAGGATAGAAAGTACTTGAAATTGGCTCTTTTCGGTGGCTTTGTTTTCATCGCTGCTTGGGGTAGTTTGCTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF423

Protein Analysis

144

Amino Acids

15.65

Weight (kDa)

8.83

Isoelectric Point (pI)

23.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	272
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	2 cut(s)	168, 221
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	160, 230, 368
AgsI	TTSAA	3 cut(s)	41, 181, 373
AluBI	AGCT	3 cut(s)	109, 146, 251
AluI	AGCT	3 cut(s)	109, 146, 251
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	6 cut(s)	122, 143, 248, 260, 305, 407
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	130, 170
AsuC2I	CCSGG	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	6 cut(s)	134, 155, 247, 260, 292, 394
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	181, 234
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	228
BfoI	RGCGCY	2 cut(s)	131, 171
BisI	GCNGC	7 cut(s)	123, 126, 144, 249, 261, 306, 408
BlsI	GCNGC	7 cut(s)	124, 127, 145, 250, 262, 307, 409
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	23
BsaHI	GRCGYC	2 cut(s)	168, 221
BsaJI	CCNNGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	16
BseXI	GCAGC	6 cut(s)	134, 155, 247, 260, 292, 394
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	100
Bsp68I	TCGCGA	1 cut(s)	272
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	2 cut(s)	168, 221
BssT1I	CCWWGG	1 cut(s)	172
BstACI	GRCGYC	2 cut(s)	168, 221
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	2 cut(s)	131, 171
BstHHI	GCGC	2 cut(s)	130, 170
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 174, 257, 269
BstSCI	CCNGG	1 cut(s)	326
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	6 cut(s)	134, 155, 247, 260, 292, 394
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	297
BtgZI	GCGATG	2 cut(s)	253, 388
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	66
BtuMI	TCGCGA	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	2 cut(s)	130, 170
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	159, 229, 367
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	9 cut(s)	109, 146, 177, 214, 251, 297, 305, 380, 393
CviKI_1	RGCY	9 cut(s)	109, 146, 177, 214, 251, 297, 305, 380, 393
CviQI	GTAC	3 cut(s)	159, 229, 367
DdeI	CTNAG	1 cut(s)	53
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	172
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	33
FaiI	YATR	5 cut(s)	6, 31, 46, 117, 163
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	1 cut(s)	29
Fnu4HI	GCNGC	7 cut(s)	123, 126, 144, 249, 261, 306, 408
FokI	GGATG	1 cut(s)	3
Fsp4HI	GCNGC	7 cut(s)	123, 126, 144, 249, 261, 306, 408
GlaI	GCGC	2 cut(s)	129, 169
GluI	GCNGC	7 cut(s)	123, 126, 144, 249, 261, 306, 408
HaeII	RGCGCY	2 cut(s)	131, 171
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	2 cut(s)	130, 170
Hin1I	GRCGYC	2 cut(s)	168, 221
Hin1II	CATG	1 cut(s)	33
Hin6I	GCGC	2 cut(s)	128, 168
HinP1I	GCGC	2 cut(s)	128, 168
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	135, 271
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4IV	ACGT	2 cut(s)	22, 332
HpyCH4V	TGCA	2 cut(s)	29, 143
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 174, 257, 269
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	22, 332
Hsp92I	GRCGYC	2 cut(s)	168, 221
Hsp92II	CATG	1 cut(s)	33
HspAI	GCGC	2 cut(s)	128, 168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	120, 294, 340
Lsp1109I	GCAGC	6 cut(s)	134, 155, 247, 260, 292, 394
MaeII	ACGT	2 cut(s)	22, 332
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	3 cut(s)	34, 138, 374
Mly113I	GGCGCC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	56, 199, 287, 349
MspA1I	CMGCKG	3 cut(s)	109, 125, 146
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	4 cut(s)	86, 174, 257, 269
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	169
NruI	TCGCGA	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	297
PflFI	GACNNNGTC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	7 cut(s)	124, 127, 145, 250, 262, 307, 409
PluTI	GGCGCC	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	2 cut(s)	109, 146
RruI	TCGCGA	1 cut(s)	272
RsaI	GTAC	3 cut(s)	160, 230, 368
RsaNI	GTAC	3 cut(s)	159, 229, 367
SatI	GCNGC	7 cut(s)	123, 126, 144, 249, 261, 306, 408
Sau3AI	GATC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	6 cut(s)	25, 111, 148, 210, 253, 335
SfoI	GGCGCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	34, 138, 374
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	1 cut(s)	125
SspDI	GGCGCC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	172
TaiI	ACGT	2 cut(s)	25, 335
TasI	AATT	3 cut(s)	34, 138, 374
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	128
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	6 cut(s)	122, 143, 248, 260, 305, 407
TspDTI	ATGAA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.