Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Reverse (-)

8199744 .. 8201154

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATCCTCAAGTGTGGCACAAAGTAGCCGCCCTCTCTGGAATGGCAGCTCTTGGGTTGGGTACATATGGCGCCCATGGCTTCAAACCCAAAAACCCAACTTACAAAGAGGTTTGGCACACAGCTTCTCTCTACCATTTGGTTCACACGGCAGCTCTTCTTGCTGCCCCTATCACCAAGAACCCCACCATTTTTGGAGGCCTTTTGACTACTGGTATACTCGCATTTTCCGGGACGTGTTATACTGTGGCATTACTCGAAGATAGAAAGTACTCTACGTTGGCCCCTTTCGGTGGCTTTGCTTTCATCGCTGCTTGGGGCAGCTTGCTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF423

Protein Analysis

112

Amino Acids

11.84

Weight (kDa)

9.17

Isoelectric Point (pI)

17.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	2 cut(s)	64, 272
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	237
AluBI	AGCT	4 cut(s)	50, 125, 155, 324
AluI	AGCT	4 cut(s)	50, 125, 155, 324
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	199, 282
ApeKI	GCWGC	5 cut(s)	47, 152, 164, 311, 321
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	59, 151, 164, 298
BceAI	ACGGC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	6 cut(s)	30, 48, 153, 165, 312, 322
BlsI	GCNGC	6 cut(s)	31, 49, 154, 166, 313, 323
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	6, 73, 285
BmrFI	CCNGG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	4 cut(s)	59, 151, 164, 298
BshFI	GGCC	2 cut(s)	201, 284
BshNI	GGYRCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	201, 284
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	201, 284
BspLI	GGNNCC	3 cut(s)	6, 73, 285
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	4
BssNAI	GTATAC	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 161, 308
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	4 cut(s)	59, 151, 164, 298
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	201, 284
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	63, 271
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	9 cut(s)	29, 50, 81, 125, 155, 201, 284, 297, 324
CviKI_1	RGCY	9 cut(s)	29, 50, 81, 125, 155, 201, 284, 297, 324
CviQI	GTAC	2 cut(s)	63, 271
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	76
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	80
FaiI	YATR	5 cut(s)	67, 69, 78, 218, 243
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	6 cut(s)	30, 48, 153, 165, 312, 322
Fsp4HI	GCNGC	6 cut(s)	30, 48, 153, 165, 312, 322
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	6 cut(s)	30, 48, 153, 165, 312, 322
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	201, 284
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	145, 218
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	2 cut(s)	145, 218
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	236, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 161, 308
HpySE526I	ACGT	2 cut(s)	236, 278
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	162
LpnPI	CCDG	3 cut(s)	24, 198, 244
Lsp1109I	GCAGC	4 cut(s)	59, 151, 164, 298
MaeII	ACGT	2 cut(s)	236, 278
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	149, 272
MflI	RGATCY	1 cut(s)	4
Mly113I	GGCGCC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	18, 44, 103, 191
MseI	TTAA	1 cut(s)	334
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	78, 161, 308
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	3 cut(s)	6, 73, 285
PceI	AGGCCT	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	31, 49, 154, 166, 313, 323
PluTI	GGCGCC	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	6, 73, 285
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	64, 272
RsaNI	GTAC	2 cut(s)	63, 271
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	334
SatI	GCNGC	6 cut(s)	30, 48, 153, 165, 312, 322
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	7 cut(s)	52, 114, 127, 157, 239, 281, 326
SfoI	GGCGCC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	30
SspDI	GGCGCC	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	239, 281
TaqI	TCGA	1 cut(s)	258
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TseI	GCWGC	5 cut(s)	47, 152, 164, 311, 321
TspDTI	ATGAA	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	217
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.