Rroxscaffold_2G00093020

Protein of unknown function (DUF423)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002952
Physical Location & Seq
Reverse (-)
14442017 .. 14443945
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093020.1

Sequence Viewer

Length: 261 bp
ATGGCTTTAAGCCCCAAAACCCAGTTTACAAGGAGGTTTGGCAAACGGCTTCTCTGTACCATTTGGTTCACACAGCAGCTCTGCTTGCTGCCCCCTCTCACAAAAAACCCCAATATTTTTGGAGGCCTTTTAACCACCGGTATACTCGCATTCTCGGGGACGTGTTATACTGTGGCATTACTCGAAGATAGGAAGTACAATAGATTGGCTCCTTTTGGTGGCGTTGCTTTCATCGCTGCTTGGGCTAGCTTACTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF423

Protein Analysis

86

Amino Acids

9.57

Weight (kDa)

10.05

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF423 PF04241 32 - 74 2.3e-09 Protein of unknown function (DUF423)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AfaI GTAC 2 cut(s) 58, 197
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 137
AjiI CACGTC 1 cut(s) 162
AluBI AGCT 2 cut(s) 79, 249
AluI AGCT 2 cut(s) 79, 249
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 76, 88, 236
AsiGI ACCGGT 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 154
BbvI GCAGC 3 cut(s) 75, 88, 223
BceAI ACGGC 1 cut(s) 62
BfaI CTAG 1 cut(s) 246
BisI GCNGC 3 cut(s) 77, 89, 237
BlsI GCNGC 3 cut(s) 78, 90, 238
BmeT110I CYCGRG 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 16
BmtI GCTAGC 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 75, 88, 223
BshFI GGCC 1 cut(s) 126
BshTI ACCGGT 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 154
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 210
BspOI GCTAGC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 137
BssNAI GTATAC 1 cut(s) 143
Bst1107I GTATAC 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 86, 247
BstMWI GCNNNNNNNGC 3 cut(s) 85, 233, 242
BstV1I GCAGC 3 cut(s) 75, 88, 223
BstZ17I GTATAC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 217
BtrI CACGTC 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 86, 247
Cfr10I RCCGGY 1 cut(s) 137
Csp6I GTAC 2 cut(s) 57, 196
CspAI ACCGGT 1 cut(s) 137
CviJI RGCY 8 cut(s) 5, 12, 49, 79, 126, 209, 245, 249
CviKI_1 RGCY 8 cut(s) 5, 12, 49, 79, 126, 209, 245, 249
CviQI GTAC 2 cut(s) 57, 196
Eco147I AGGCCT 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 154
FaiI YATR 2 cut(s) 143, 168
FaqI GGGAC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 77, 89, 237
Fsp4HI GCNGC 3 cut(s) 77, 89, 237
FspBI CTAG 1 cut(s) 246
GluI GCNGC 3 cut(s) 77, 89, 237
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 138
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 3 cut(s) 27, 69, 143
Hpy8I GTNNAC 3 cut(s) 27, 69, 143
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 233, 242
HpySE526I ACGT 1 cut(s) 161
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 2 cut(s) 35, 151
Lsp1109I GCAGC 3 cut(s) 75, 88, 223
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 161
MboII GAAGA 1 cut(s) 197
MnlI CCTC 3 cut(s) 27, 105, 116
MseI TTAA 2 cut(s) 8, 131
MspI CCGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 85, 233, 242
NheI GCTAGC 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 210
PceI AGGCCT 1 cut(s) 126
PctI GAATGC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 3 cut(s) 78, 90, 238
PspN4I GGNNCC 1 cut(s) 210
RsaI GTAC 2 cut(s) 58, 197
RsaNI GTAC 2 cut(s) 57, 196
SaqAI TTAA 2 cut(s) 8, 131
SatI GCNGC 3 cut(s) 77, 89, 237
SetI ASST 4 cut(s) 38, 81, 164, 251
SseBI AGGCCT 1 cut(s) 126
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 246
StuI AGGCCT 1 cut(s) 126
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 183
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 2 cut(s) 8, 131
Tru9I TTAA 2 cut(s) 8, 131
TseI GCWGC 3 cut(s) 76, 88, 236
TspDTI ATGAA 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.