Rh6AG067200

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002952
Physical Location & Seq
Forward (+)
9811816 .. 9815961
4146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG067200.1

Sequence Viewer

Length: 243 bp
ATGTCTTCCTTGAGTAGGGAACTGGTGTTCTTGATTTTACAGTTCTTGAACGAGGAGAAGTTCAACGAAACAGTTCATAACCCAGTTGAGAGAATAGCTCCTGTTGTCGACAACGCTAAGAACTGGAGCCAAGGGGAAGAGAAGCATTTGGGTCTCGGTTTTGATAGGTGCAACGATATTGATCCAATTAGGTGTGTTTTTCCTTCTTTCTTTTGTTGCAAAATTGTTTTAAATCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

80

Amino Acids

9.24

Weight (kDa)

5.21

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH_TPL PF17814 5 - 27 2.4e-09 LisH-like dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 2 cut(s) 49, 64
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 31
BsaBI GATNNNNATC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 3 cut(s) 27, 83, 128
Bse8I GATNNNNATC 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 3 cut(s) 27, 83, 128
BseRI GAGGAG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 3 cut(s) 27, 83, 128
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 42, 73
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 13
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 181
CviJI RGCY 2 cut(s) 98, 129
CviKI_1 RGCY 2 cut(s) 98, 129
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraI TTTAAA 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaiI YATR 1 cut(s) 78
FblI GTMKAC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 145
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 31, 46
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 42, 73
HpyCH4V TGCA 2 cut(s) 171, 219
HpyF3I CTNAG 1 cut(s) 117
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 103, 126
LpnPI CCDG 4 cut(s) 8, 96, 109, 114
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 149, 227
MluCI AATT 2 cut(s) 186, 222
MnlI CCTC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 1 cut(s) 230
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 128
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 230
Sau3AI GATC 1 cut(s) 181
SetI ASST 3 cut(s) 100, 170, 194
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 186, 222
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 42, 73
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 186, 222
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 65
XagI CCTNNNNNAGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.