Rh5AG222200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
26412711 .. 26414714
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG222200.1

Sequence Viewer

Length: 300 bp
ATGCAATCAAATTTGGGAAAAATAGTTGAATTCCAATTTTCAGGATGGACTCATACTCTTTCTTTGAAAATACCCCAAAGCTTGCCAACATTTGGGAATCTCAGGCAATTGAACTTGGACCTCCTTTCATACCAAAGTAAAAGTGAGGAAGGTAATCCGCTGCCTTCTCTGAATCTTCTCAAAGTTGCGTCGCTTTTGAAAGAACTTGCTATAACCGTCAGTATCAATACTTCTACTATGGATGCAAATATTTTGTTCTCTTGCTTGCTCTTATTCGTACCTGAAAACATATACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.01

Weight (kDa)

5.64

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 92
AciI CCGC 1 cut(s) 158
AcsI RAATTY 2 cut(s) 10, 29
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 4 cut(s) 29, 67, 112, 199
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 10, 29
AspS9I GGNCC 1 cut(s) 118
AvaII GGWCC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 39
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 50, 247
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 92
BspACI CCGC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 83, 266
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 50, 247
BstV1I GCAGC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 50, 247
Cac8I GCNNGC 2 cut(s) 83, 266
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 278
CviJI RGCY 1 cut(s) 81
CviKI_1 RGCY 1 cut(s) 81
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 29
FaiI YATR 6 cut(s) 54, 130, 212, 239, 290, 292
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 2 cut(s) 57, 254
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HgaI GACGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 3 cut(s) 49, 97, 172
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 143, 174
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 4, 245
HpyF3I CTNAG 1 cut(s) 101
LpnPI CCDG 3 cut(s) 27, 88, 294
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 167
MfeI CAATTG 1 cut(s) 107
MluCI AATT 4 cut(s) 10, 29, 35, 107
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 2 cut(s) 131, 139
MspA1I CMGCKG 1 cut(s) 160
MunI CAATTG 1 cut(s) 107
PfeI GAWTC 2 cut(s) 97, 172
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SatI GCNGC 1 cut(s) 161
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 43
SetI ASST 4 cut(s) 83, 123, 154, 283
SfaNI GCATC 1 cut(s) 232
SgeI CNNG 8 cut(s) 54, 94, 115, 127, 218, 273, 277, 293
SinI GGWCC 1 cut(s) 118
Sse9I AATT 4 cut(s) 10, 29, 35, 107
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 250
TaaI ACNGT 1 cut(s) 217
TasI AATT 4 cut(s) 10, 29, 35, 107
TfiI GAWTC 2 cut(s) 97, 172
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 10, 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.