Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Forward (+)

68535651 .. 68560093

Gene Structure 24443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG466100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGTTAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCGCAAGGCAATTTGGGAATGTGGTATTTGCAAGTGGTACACTCGACTCCAAAGCGGGTTATTAGAAGTTCCTTAAGCAACAGGAGGGAGAGTGAGTGCTTAATGGCTATCATCATTCCGAAGCTTTCAGAGTTTTACCAATTTCAACAAACTTTCTATAGGAAGGATGTAACTGAGAACCGAGGAAGGGCTTTGTATTTGGAGGGCGTGATAGCTACTTTTCACTCATCAAAACTTGTTAGTATGGCATTTGGTCCCAGTACATCTGCAAGAACTTATTGGCTAATAAGGGCCTGCTTAACTCTGGCATTTGGTCCCAGTATGGCATTTGGTCCCAACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Sel1

Protein Analysis

146

Amino Acids

16.48

Weight (kDa)

9.69

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	96
AciI	CCGC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	62, 132, 355
AfiI	CCNNNNNNNGG	2 cut(s)	87, 280
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	4 cut(s)	71, 217, 308, 437
AluI	AGCT	4 cut(s)	71, 217, 308, 437
AoxI	GGCC	2 cut(s)	78, 384
ApeKI	GCWGC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	4 cut(s)	347, 384, 407, 425
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	3 cut(s)	347, 407, 425
BbvI	GCAGC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	250
BfrI	CTTAAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	3 cut(s)	347, 407, 425
BmgT120I	GGNCC	4 cut(s)	347, 384, 407, 425
BmiI	GGNNCC	3 cut(s)	349, 409, 427
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	2 cut(s)	345, 405
BmuI	ACTGGG	2 cut(s)	345, 405
BpuMI	CCSGG	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	75, 274
BsaWI	WCCGGW	1 cut(s)	87
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 173, 199, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 280
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	351, 411
BseDI	CCNNGG	2 cut(s)	75, 274
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	87, 280
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	351, 411
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	80, 386
BsiSI	CCGG	4 cut(s)	12, 64, 81, 88
BslFI	GGGAC	3 cut(s)	333, 393, 411
BslI	CCNNNNNNNGG	2 cut(s)	87, 280
BsmFI	GGGAC	3 cut(s)	333, 393, 411
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	80, 386
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	2 cut(s)	80, 386
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	349, 409, 427
BspTI	CTTAAG	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	351, 411
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	75, 274
BstAFI	CTTAAG	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	80, 386
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	388
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	347, 384, 407, 425
Csp6I	GTAC	3 cut(s)	61, 131, 354
CviJI	RGCY	9 cut(s)	71, 80, 200, 217, 284, 308, 376, 386, 437
CviKI_1	RGCY	9 cut(s)	71, 80, 200, 217, 284, 308, 376, 386, 437
CviQI	GTAC	3 cut(s)	61, 131, 354
DdeI	CTNAG	1 cut(s)	267
Eco47I	GGWCC	3 cut(s)	347, 407, 425
Eco91I	GGTNACC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	384
EcoO65I	GGTNACC	1 cut(s)	83
FaiI	YATR	4 cut(s)	20, 252, 338, 416
FaqI	GGGAC	3 cut(s)	333, 393, 411
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	72
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	80, 386
HapII	CCGG	4 cut(s)	12, 64, 81, 88
HhaI	GCGC	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HindIII	AAGCTT	2 cut(s)	215, 435
HinfI	GANTC	2 cut(s)	15, 139
HpaII	CCGG	4 cut(s)	12, 64, 81, 88
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	213, 223
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	250, 273
HpyCH4V	TGCA	2 cut(s)	124, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	267
HspAI	GCGC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	83, 262
MluCI	AATT	2 cut(s)	103, 233
MlyI	GAGTC	2 cut(s)	9, 133
MnlI	CCTC	5 cut(s)	26, 70, 171, 269, 289
MseI	TTAA	4 cut(s)	45, 167, 194, 392
MspCI	CTTAAG	1 cut(s)	166
MspI	CCGG	4 cut(s)	12, 64, 81, 88
MspR9I	CCNGG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	349, 409, 427
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	96
PctI	GAATGC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	9, 133
PpsI	GAGTC	2 cut(s)	9, 133
PspEI	GGTNACC	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	349, 409, 427
PspPI	GGNCC	4 cut(s)	347, 384, 407, 425
RsaI	GTAC	3 cut(s)	62, 132, 355
RsaNI	GTAC	3 cut(s)	61, 131, 354
SaqAI	TTAA	4 cut(s)	45, 167, 194, 392
SatI	GCNGC	1 cut(s)	72
Sau96I	GGNCC	4 cut(s)	347, 384, 407, 425
SchI	GAGTC	2 cut(s)	9, 133
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	5 cut(s)	45, 73, 219, 310, 439
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	3 cut(s)	347, 407, 425
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	103, 233
SsiI	CCGC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	63
TaqI	TCGA	2 cut(s)	6, 137
TasI	AATT	2 cut(s)	103, 233
TatI	WGTACW	1 cut(s)	353
Tru1I	TTAA	4 cut(s)	45, 167, 194, 392
Tru9I	TTAA	4 cut(s)	45, 167, 194, 392
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	83
Vha464I	CTTAAG	1 cut(s)	166
VpaK11BI	GGWCC	3 cut(s)	347, 407, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.