Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002952

Physical Location & Seq

Genomic Coordinates Reverse (-)

20978979 .. 20995340

Gene Structure 16362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG189100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCGTTAGCTGCAGAGAATGTTCAAGTTGAAAAGGTGATGACTTTACTTGATGCAATGAAGGAGCCTGAGGGTGAGCAGGTTTCCAAAGTGGATGCGGAAGTGAGCTCCGCGGTAGAGGAAGACTCGCTTCCAGTTGGGGATGTGATTACCTCAACTGTGAGGTCAGTTACTCTTCATCACGACAGTGATCGGAGAGGTTTTTATTTGGTGGTTTGTATCAAATCTCCGAAAGGAAACCAAGCAAGGGAAGAAACAACAATGAATCCTATACTATGGCACAAATTAGCTGCAGTCTCTGGAATGGCAGCTTTTGGGTTGGGCATATATGGTGCTGATGGCTTTAAACCCAAAAACCCAGCTTACAAGGAGAAAACATTCCAAACTTTGCCAACATTTGGGAATCTCAGACAATTGAACTTGGATATCCCTTCATACCAAAGTAAAAGTGAGGAAGCTACTTTTCACTCATCAAAACTTGTTAGTATGGCATTTGGTCCCAGTACATCTGCAAGAACTTATTGGCTAATAAGGGCCTGCTTAACTCTGGCATTTGGTCCCAGTATGGCATTTGGTCCCAACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF423

Protein Analysis

196

Amino Acids

21.35

Weight (kDa)

6.43

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04900 AT2G04900
fragaria_vesca	FvH4_6g40890 FvH4_6g40890
malus_domestica	MD09G1123700.v1.1 MD17G1114500.v1.1 MD17G1249100.v1.1
prunus_persica	Prupe.3G200400_v2.0.a1
pyrus_communis	pycom09g04770 pycom17g10580
rosa_chinensis	RchiOBHm_Chr2g0156461 RchiOBHm_Chr5g0026981
rosa_laevigata	RLG00000020401 RLG00000020914
rosa_multiflora	Rmu_sc0005392.1_g000016
rosa_roxburghii	Rroxscaffold_1G00048440 Rroxscaffold_2G00093020
rosa_rugosa	Rorug02G0453200 Rorug04G0211600 Rorug05G0540700 Rorug05G0540700
rosa_samantha	Rh2AG466100 Rh2AG519500 Rh2CG504500 Rh3AG336100 Rh3DG213000 Rh4BG061500 Rh4CG110000 Rh4DG108900 Rh5AG222200 Rh5DG189100 Rh5DG227300 Rh6AG067200 Rh6DG230900 Rh7CG430300 Rh7DG288500 Rh7DG323400
rosa_wichuraiana	Rw2G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	98, 111, 113
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	247, 398
AgsI	TTSAA	3 cut(s)	26, 32, 418
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	7 cut(s)	11, 108, 290, 311, 362, 458, 587
AluI	AGCT	7 cut(s)	11, 108, 290, 311, 362, 458, 587
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	11, 290, 308
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	4 cut(s)	497, 534, 557, 575
AsuHPI	GGTGA	2 cut(s)	49, 86
AvaII	GGWCC	3 cut(s)	497, 557, 575
AxyI	CCTNAGG	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	277, 320
BccI	CCATC	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	301
BfmI	CTRYAG	2 cut(s)	12, 291
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	12, 291, 309
BlsI	GCNGC	3 cut(s)	13, 292, 310
Bme18I	GGWCC	3 cut(s)	497, 557, 575
BmgT120I	GGNCC	4 cut(s)	497, 534, 557, 575
BmiI	GGNNCC	4 cut(s)	66, 499, 559, 577
BmrI	ACTGGG	2 cut(s)	495, 555
BmsI	GCATC	2 cut(s)	43, 85
BmuI	ACTGGG	2 cut(s)	495, 555
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 398
Bse1I	ACTGG	3 cut(s)	134, 501, 561
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	100, 148
BseLI	CCNNNNNNNGG	2 cut(s)	247, 398
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	60, 421
BseNI	ACTGG	3 cut(s)	134, 501, 561
BseXI	GCAGC	2 cut(s)	277, 320
BseYI	CCCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	110
BslFI	GGGAC	3 cut(s)	483, 543, 561
BslI	CCNNNNNNNGG	2 cut(s)	247, 398
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	3 cut(s)	483, 543, 561
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	3 cut(s)	98, 111, 113
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	2 cut(s)	61, 420
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	4 cut(s)	66, 499, 559, 577
BspMAI	CTGCAG	2 cut(s)	16, 295
BspMI	ACCTGC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	134, 501, 561
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	160, 188
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	2 cut(s)	69, 407
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	100, 148
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	190
BstSFI	CTRYAG	2 cut(s)	12, 291
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	277, 320
BstV2I	GAAGAC	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	100, 148
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	4 cut(s)	497, 534, 557, 575
Cfr42I	CCGCGG	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	504
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	2 cut(s)	69, 407
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	3 cut(s)	497, 557, 575
Eco53kI	GAGCTC	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	110
FaiI	YATR	8 cut(s)	272, 277, 326, 328, 330, 436, 488, 566
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	3 cut(s)	483, 543, 561
Fnu4HI	GCNGC	3 cut(s)	12, 291, 309
FokI	GGATG	2 cut(s)	107, 155
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	12, 291, 309
GluI	GCNGC	3 cut(s)	12, 291, 309
GsaI	CCCAGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	3 cut(s)	125, 265, 403
HphI	GGTGA	2 cut(s)	49, 86
Hpy188I	TCNGA	3 cut(s)	195, 231, 410
Hpy188III	TCNNGA	2 cut(s)	182, 300
HpyAV	CCTTC	2 cut(s)	55, 441
HpyCH4III	ACNGT	2 cut(s)	160, 188
HpyCH4V	TGCA	4 cut(s)	14, 56, 293, 512
HpyF3I	CTNAG	2 cut(s)	69, 407
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	64, 113
LpnPI	CCDG	9 cut(s)	65, 81, 147, 285, 372, 514, 533, 550, 574
Lsp1109I	GCAGC	2 cut(s)	277, 320
LweI	GCATC	2 cut(s)	43, 85
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	134, 167, 263
MfeI	CAATTG	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	284, 413
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	64, 112, 156, 163, 191, 445
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	345, 542
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	113
NdeII	GATC	1 cut(s)	190
NlaIV	GGNNCC	4 cut(s)	66, 499, 559, 577
OliI	CACNNNNGTG	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	265, 403
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	13, 292, 310
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	66, 499, 559, 577
PspPI	GGNCC	4 cut(s)	497, 534, 557, 575
PstI	CTGCAG	2 cut(s)	16, 295
PstNI	CAGNNNCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	110
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	345, 542
SatI	GCNGC	3 cut(s)	12, 291, 309
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	4 cut(s)	497, 534, 557, 575
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	110
SfaNI	GCATC	2 cut(s)	43, 85
SfcI	CTRYAG	2 cut(s)	12, 291
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	3 cut(s)	497, 557, 575
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	284, 413
SsiI	CCGC	3 cut(s)	98, 111, 113
SstI	GAGCTC	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	160, 188
TasI	AATT	2 cut(s)	284, 413
TatI	WGTACW	1 cut(s)	503
TfiI	GAWTC	2 cut(s)	265, 403
Tru1I	TTAA	2 cut(s)	345, 542
Tru9I	TTAA	2 cut(s)	345, 542
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	3 cut(s)	11, 290, 308
TspDTI	ATGAA	4 cut(s)	74, 167, 278, 423
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	3 cut(s)	497, 557, 575
XmnI	GAANNNNTTC	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.