Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

7258232 .. 7262561

Gene Structure 4330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCCGCACCTTGTTCGGGAGAATCTCTTCATCGGCAACATCACCGACGCAGTGGAAATTCTCGAAAACGGCAGCGCCACCGTCACTCATATCCTCTCGGTTCTCAGCTCCGCCTCCATTTCCTTCTTCTCGGAGTACAAGAAGGGCCTCGCAATCCCCACCAAGGAGATAAAGACGGTCTACGCCGACGGCGGCTCCGGCGATGATTCCTCGGCGTCCTCCGTCGGCGGGAAGGTGGTGTACTTGGTGGAATATGCGGGGAAGGATTTGAAGCTGGTGAGGATGGGGGTTCCGATTAGAGATATGGAGAGTGAGAATTTGTTGGATTCTTTGGAGGTGTGTTTGGATTTTATTGATCAGAGTCGAAAACAGGGCTCTGTTTTGGTGCATTGCTTTGCTGGTGTGTCTAGAAGTGCAGCTGTCATTACGGCGTATCTTATGAGAGCAGAACAGTTATCGCAAGAAGATGCACTAGGATCCCTGCGGCAAAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAAATCAGCTAAAAATGTACGAGGAAATGGGCTTCAAGGTTGATCATGCCAGCCCCATATATAAGTCTTTCCGCCTCAAAATATTGGGTGAATCTTATTATCGCGGTGATAAAATAGACAGCTCTAAATTTGGCGCTGATCCTGGTTTGCCCAGTGATGTTACCTCTCAAGTGGAATCACCTCCAAACGGAGGTAAAACTGGGACATCTGCGTTCCGCTGCAAAAAGTGCCGAAGACTTGTTGCTGTACAGGATAATGTTGTGGACCACATTCCAGGTCAGGGTGAGACATCTTTTGAATGGCGTAAACGGAAAAGTAGCAACTCTAACAACCCTGAGGATTCTGAATGTTCATCCATATTTGTTGAGCCTCTGAAATGGATGACAGCAGTGGAAGAAGGAGCAATGGAGGGCAAGTTGTCTTGTGCACATTGTGATGCTCGCTTGGGTTACTTCAACTGGTCAGGTATCCAATGCAGTTGCGGGAGCTGGATCACCCCTGCTTTTCAGCTTCATAGAAGTCGAGTAGACACCAGCAGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

356

Amino Acids

38.9

Weight (kDa)

5.61

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	91 - 183	1.8e-23	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	92 - 149	3.2e-07	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	180, 1050
AccII	CGCG	1 cut(s)	627
AclWI	GGATC	4 cut(s)	471, 484, 656, 1022
AcsI	RAATTY	3 cut(s)	57, 316, 650
AcyI	GRCGYC	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	956
AfaI	GTAC	4 cut(s)	137, 242, 542, 771
AfiI	CCNNNNNNNGG	7 cut(s)	16, 163, 228, 515, 710, 713, 803
AgsI	TTSAA	4 cut(s)	271, 559, 821, 979
AjnI	CCWGG	2 cut(s)	664, 796
AluBI	AGCT	8 cut(s)	108, 274, 419, 492, 532, 645, 1011, 1033
AluI	AGCT	8 cut(s)	108, 274, 419, 492, 532, 645, 1011, 1033
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	1 cut(s)	803
Alw44I	GTGCAC	1 cut(s)	948
AlwI	GGATC	4 cut(s)	471, 484, 656, 1022
AoxI	GGCC	1 cut(s)	145
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	3 cut(s)	72, 416, 741
ApoI	RAATTY	3 cut(s)	57, 316, 650
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	77, 659
AspS9I	GGNCC	2 cut(s)	145, 787
AsuHPI	GGTGA	7 cut(s)	34, 289, 623, 641, 693, 818, 1009
AvaII	GGWCC	1 cut(s)	787
AxyI	CCTNAGG	1 cut(s)	858
BaeGI	GKGCMC	1 cut(s)	952
BamHI	GGATCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	952
BbvI	GCAGC	3 cut(s)	84, 428, 728
BccI	CCATC	2 cut(s)	277, 509
BceAI	ACGGC	3 cut(s)	85, 205, 444
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	666, 798
BciVI	GTATCC	1 cut(s)	1001
BclI	TGATCA	2 cut(s)	355, 565
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	2 cut(s)	408, 473
BfoI	RGCGCY	2 cut(s)	78, 660
BfuI	GTATCC	1 cut(s)	1001
BisI	GCNGC	6 cut(s)	5, 73, 193, 417, 485, 742
BlsI	GCNGC	6 cut(s)	6, 74, 194, 418, 486, 743
Bme1390I	CCNGG	2 cut(s)	666, 798
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	145, 787
BmiI	GGNNCC	3 cut(s)	196, 291, 478
BmrFI	CCNGG	2 cut(s)	666, 798
BmrI	ACTGGG	2 cut(s)	669, 732
BmsI	GCATC	2 cut(s)	457, 949
BmuI	ACTGGG	2 cut(s)	669, 732
BpiI	GAAGAC	1 cut(s)	763
BpuEI	CTTGAG	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	162, 210
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 923, 953
Bsc4I	CCNNNNNNNGG	7 cut(s)	16, 163, 228, 515, 710, 713, 803
Bse1I	ACTGG	3 cut(s)	675, 727, 986
Bse21I	CCTNAGG	1 cut(s)	858
Bse3DI	GCAATG	2 cut(s)	388, 933
BseBI	CCWGG	2 cut(s)	666, 798
BseDI	CCNNGG	2 cut(s)	162, 210
BseGI	GGATG	3 cut(s)	288, 875, 909
BseLI	CCNNNNNNNGG	7 cut(s)	16, 163, 228, 515, 710, 713, 803
BseMI	GCAATG	2 cut(s)	388, 933
BseMII	CTCAG	2 cut(s)	118, 849
BseNI	ACTGG	3 cut(s)	675, 727, 986
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	3 cut(s)	84, 428, 728
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	952
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	7 cut(s)	16, 163, 228, 515, 710, 713, 803
BsmAI	GTCTC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	377, 952
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	5 cut(s)	355, 476, 565, 661, 1014
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	117, 850
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	3 cut(s)	196, 291, 478
BspPI	GGATC	4 cut(s)	471, 484, 656, 1022
BsrDI	GCAATG	2 cut(s)	388, 933
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	3 cut(s)	675, 727, 986
BssECI	CCNNGG	2 cut(s)	162, 210
BssMI	GATC	5 cut(s)	355, 476, 565, 661, 1014
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	666, 798
Bst4CI	ACNGT	3 cut(s)	82, 178, 453
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	750
BstAUI	TGTACA	1 cut(s)	769
BstC8I	GCNNGC	2 cut(s)	574, 964
BstDEI	CTNAG	2 cut(s)	104, 858
BstF5I	GGATG	3 cut(s)	288, 875, 909
BstFNI	CGCG	1 cut(s)	627
BstH2I	RGCGCY	2 cut(s)	78, 660
BstHHI	GCGC	2 cut(s)	77, 659
BstKTI	GATC	5 cut(s)	358, 479, 568, 664, 1017
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	5 cut(s)	355, 476, 565, 661, 1014
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 750
BstNI	CCWGG	2 cut(s)	666, 798
BstSCI	CCNGG	2 cut(s)	664, 796
BstSLI	GKGCMC	1 cut(s)	952
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	3 cut(s)	84, 428, 728
BstV2I	GAAGAC	1 cut(s)	763
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	858
BsuI	GTATCC	1 cut(s)	1001
BsuRI	GGCC	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	288, 875, 909
BtsI	GCAGTG	2 cut(s)	57, 918
BtsIMutI	CAGTG	3 cut(s)	57, 682, 918
Cac8I	GCNNGC	2 cut(s)	574, 964
CfoI	GCGC	2 cut(s)	77, 659
Cfr13I	GGNCC	2 cut(s)	145, 787
CseI	GACGC	2 cut(s)	56, 204
Csp6I	GTAC	4 cut(s)	136, 241, 541, 770
CviAII	CATG	1 cut(s)	569
CviQI	GTAC	4 cut(s)	136, 241, 541, 770
DdeI	CTNAG	2 cut(s)	104, 858
DpnI	GATC	5 cut(s)	357, 478, 567, 663, 1016
DpnII	GATC	5 cut(s)	355, 476, 565, 661, 1014
DraIII	CACNNNGTG	1 cut(s)	956
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	100, 584
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	787
Eco81I	CCTNAGG	1 cut(s)	858
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	664, 796
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	572
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	1 cut(s)	568
FauI	CCCGC	3 cut(s)	221, 250, 998
FbaI	TGATCA	2 cut(s)	355, 565
FblI	GTMKAC	2 cut(s)	180, 1050
Fnu4HI	GCNGC	6 cut(s)	5, 73, 193, 417, 485, 742
FokI	GGATG	3 cut(s)	295, 862, 916
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	6 cut(s)	5, 73, 193, 417, 485, 742
FspBI	CTAG	2 cut(s)	408, 473
GlaI	GCGC	2 cut(s)	76, 658
GluI	GCNGC	6 cut(s)	5, 73, 193, 417, 485, 742
HaeII	RGCGCY	2 cut(s)	78, 660
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	2 cut(s)	56, 204
HhaI	GCGC	2 cut(s)	77, 659
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	572
Hin6I	GCGC	2 cut(s)	75, 657
HinP1I	GCGC	2 cut(s)	75, 657
HinfI	GANTC	7 cut(s)	22, 206, 326, 361, 614, 698, 863
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	7 cut(s)	34, 289, 623, 641, 693, 818, 1009
Hpy166II	GTNNAC	6 cut(s)	181, 241, 787, 830, 950, 1051
Hpy188I	TCNGA	5 cut(s)	133, 294, 360, 868, 897
Hpy188III	TCNNGA	3 cut(s)	17, 62, 408
Hpy8I	GTNNAC	6 cut(s)	181, 241, 787, 830, 950, 1051
Hpy99I	CGWCG	3 cut(s)	50, 191, 227
HpyAV	CCTTC	5 cut(s)	133, 136, 226, 256, 914
HpyCH4III	ACNGT	3 cut(s)	82, 178, 453
HpyCH4V	TGCA	6 cut(s)	388, 416, 470, 744, 950, 999
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 750
HpyF3I	CTNAG	2 cut(s)	104, 858
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	572
HspAI	GCGC	2 cut(s)	75, 657
Ksp22I	TGATCA	2 cut(s)	355, 565
Kzo9I	GATC	5 cut(s)	355, 476, 565, 661, 1014
LmnI	GCTCC	4 cut(s)	113, 200, 923, 1008
Lsp1109I	GCAGC	3 cut(s)	84, 428, 728
LweI	GCATC	2 cut(s)	457, 949
MaeI	CTAG	2 cut(s)	408, 473
MaeIII	GTNAC	3 cut(s)	82, 682, 971
MalI	GATC	5 cut(s)	357, 478, 567, 663, 1016
MboI	GATC	5 cut(s)	355, 476, 565, 661, 1014
MboII	GAAGA	5 cut(s)	19, 118, 476, 768, 929
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	377, 952
MluCI	AATT	3 cut(s)	57, 316, 650
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	957
MspA1I	CMGCKG	2 cut(s)	419, 741
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	666, 798
MvaI	CCWGG	2 cut(s)	666, 798
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	198, 750
NdeII	GATC	5 cut(s)	355, 476, 565, 661, 1014
NlaIII	CATG	1 cut(s)	572
NlaIV	GGNNCC	3 cut(s)	196, 291, 478
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	6 cut(s)	22, 206, 326, 614, 698, 863
PkrI	GCNGC	6 cut(s)	6, 74, 194, 418, 486, 743
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	664, 796
PspGI	CCWGG	2 cut(s)	664, 796
PspN4I	GGNNCC	3 cut(s)	196, 291, 478
PspPI	GGNCC	2 cut(s)	145, 787
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	4 cut(s)	137, 242, 542, 771
RsaNI	GTAC	4 cut(s)	136, 241, 541, 770
RseI	CAYNNNNRTG	1 cut(s)	957
SatI	GCNGC	6 cut(s)	5, 73, 193, 417, 485, 742
Sau3AI	GATC	5 cut(s)	355, 476, 565, 661, 1014
Sau96I	GGNCC	2 cut(s)	145, 787
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	666, 798
SduI	GDGCHC	2 cut(s)	377, 952
SfaNI	GCATC	2 cut(s)	457, 949
SinI	GGWCC	1 cut(s)	787
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	3 cut(s)	57, 316, 650
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	2 cut(s)	408, 473
StyD4I	CCNGG	2 cut(s)	664, 796
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	82, 178, 453
TaqI	TCGA	3 cut(s)	63, 364, 1045
TasI	AATT	3 cut(s)	57, 316, 650
TatI	WGTACW	3 cut(s)	135, 240, 769
TauI	GCSGC	3 cut(s)	7, 195, 487
TfiI	GAWTC	6 cut(s)	22, 206, 326, 614, 698, 863
TscAI	CASTG	3 cut(s)	57, 682, 918
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	72, 416, 741
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	19, 864, 1025
TspGWI	ACGGA	3 cut(s)	211, 726, 847
TspRI	CASTG	3 cut(s)	57, 682, 918
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	3 cut(s)	57, 316, 650
XbaI	TCTAGA	1 cut(s)	407
XmiI	GTMKAC	2 cut(s)	180, 1050
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	408, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.