Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

4045153 .. 4046546

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G082800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCGTATCTTGTTCGTGAGAATCTATTCCTAGGCAACATCGGCGATGCAGCAAAGGTTATCCGAAATGGCAGCAAAGAGATCACACATATTCTCTGTGCAATTCCCACAAAGGAAAGCAAGAAGGTCTATGATGGCGGGTCTCTTCGTGGATCAACTTCTGTTGGTGATGGGTCGAAAAGTTGTTTGCTTTCCGATAAGCTTTCGTACTCGTTGGAACGTGCAGGCAAGGATTTGAAGCTGGTGAGAATGGGGGTTCCGCTAAGAGATATGGACGATGAGAATTTATTGGATTATTTGGATGTGTCACAAAAAAAGGGTTCTGTTTTGGTGCATTGCTTTGCTGGTGTTTCCAGAAGTGCATCTATCATTACAGCATATCCGATGAGAACAGAACATTTATCACAAGAAGATGCTCCAGGATCCCTGAGGCAAAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAGATCAGCTCAAAATGTACGAGGAAATGGGCTTCAAGGTTGATCATGCCAGCCCCATATATAAGTCTTTTCGCCTGAAAGTATTGGGTGAATCTTATCATCGTGGGGATAAAATAGACAGTTCTAAATTTGGGGCAGATCCTGGGTTGCCTAGTGAAGTTGCCTCTGGATTAAAAACAGCTCAAATTGGAGGAAAAACTGGCGAAAGTGAGAAATCGTTTGAGTGGCGAAAGCGAAAAAGTAGCTACTTGTGTGAGGATTCTGAATGTTCATCCATTTTTGTTGAGCCTCTAAGGTGGATGACAGCAGTTGAAGAGGAAGAGCAGTGGAGGGCAAGTTGTCATGTGCACATTGTGAAGCTCGCTTGGGTTACTTCAATTGGTCAATTGGTCAGGCATCCAATGCAGTTGTGGGAGTTAGATCACCCCCGCCTTCCAGCTTCAGAGAAGCCATGTGGACGTCAACATGTATACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

316

Amino Acids

35.21

Weight (kDa)

6.8

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	939
AciI	CCGC	3 cut(s)	138, 260, 898
AclWI	GGATC	4 cut(s)	160, 417, 430, 602
AcsI	RAATTY	2 cut(s)	283, 596
AcuI	CTGAAG	1 cut(s)	894
AcyI	GRCGYC	1 cut(s)	928
AdeI	CACNNNGTG	1 cut(s)	823
AfaI	GTAC	2 cut(s)	209, 488
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	4 cut(s)	238, 505, 782, 846
AjnI	CCWGG	2 cut(s)	418, 610
AluBI	AGCT	8 cut(s)	202, 241, 438, 478, 650, 714, 829, 908
AluI	AGCT	8 cut(s)	202, 241, 438, 478, 650, 714, 829, 908
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	815
AlwI	GGATC	4 cut(s)	160, 417, 430, 602
AlwNI	CAGNNNCTG	1 cut(s)	611
ApaLI	GTGCAC	1 cut(s)	815
ApeKI	GCWGC	2 cut(s)	50, 72
ApoI	RAATTY	2 cut(s)	283, 596
Asp700I	GAANNNNTTC	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	31
AsuHPI	GGTGA	4 cut(s)	179, 256, 569, 884
AvrII	CCTAGG	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	819
BamHI	GGATCC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	2 cut(s)	62, 84
BccI	CCATC	3 cut(s)	128, 164, 455
BciT130I	CCWGG	2 cut(s)	420, 612
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	3 cut(s)	32, 470, 621
BisI	GCNGC	2 cut(s)	51, 73
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	2 cut(s)	52, 74
Bme1390I	CCNGG	2 cut(s)	420, 612
BmiI	GGNNCC	2 cut(s)	258, 424
BmrFI	CCNGG	2 cut(s)	420, 612
BmsI	GCATC	4 cut(s)	37, 371, 403, 874
BpmI	CTGGAG	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	928
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	31, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	790, 820
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	673
Bse21I	CCTNAGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	420, 612
BseDI	CCNNGG	2 cut(s)	31, 611
BseGI	GGATG	4 cut(s)	307, 740, 774, 865
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	673
BseSI	GKGCMC	1 cut(s)	819
BseXI	GCAGC	2 cut(s)	62, 84
BsgI	GTGCAG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	147
Bso31I	GGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
BspACI	CCGC	3 cut(s)	138, 260, 898
BspCNI	CTCAG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	258, 424
BspPI	GGATC	4 cut(s)	160, 417, 430, 602
BspQI	GCTCTTC	1 cut(s)	783
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	31, 611
BssMI	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
BssNAI	GTATAC	1 cut(s)	940
BssNI	GRCGYC	1 cut(s)	928
BssT1I	CCWWGG	1 cut(s)	31
Bst1107I	GTATAC	1 cut(s)	940
Bst2UI	CCWGG	2 cut(s)	420, 612
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	3 cut(s)	150, 777, 783
BstACI	GRCGYC	1 cut(s)	928
BstAPI	GCANNNNNTGC	1 cut(s)	871
BstC8I	GCNNGC	3 cut(s)	226, 520, 831
BstDEI	CTNAG	3 cut(s)	263, 428, 761
BstF5I	GGATG	4 cut(s)	307, 740, 774, 865
BstKTI	GATC	7 cut(s)	84, 155, 425, 475, 514, 610, 892
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 871
BstNI	CCWGG	2 cut(s)	420, 612
BstNSI	RCATGY	1 cut(s)	938
BstSCI	CCNGG	2 cut(s)	418, 610
BstSLI	GKGCMC	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	62, 84
BstX2I	RGATCY	2 cut(s)	422, 607
BstYI	RGATCY	2 cut(s)	422, 607
BstZ17I	GTATAC	1 cut(s)	940
Bsu36I	CCTNAGG	1 cut(s)	428
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	307, 740, 774, 865
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	1 cut(s)	800
Cac8I	GCNNGC	3 cut(s)	226, 520, 831
CaiI	CAGNNNCTG	1 cut(s)	611
Csp6I	GTAC	2 cut(s)	208, 487
CviAII	CATG	4 cut(s)	515, 812, 921, 935
CviQI	GTAC	2 cut(s)	208, 487
DdeI	CTNAG	3 cut(s)	263, 428, 761
DpnI	GATC	7 cut(s)	83, 154, 424, 474, 513, 609, 891
DpnII	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
DraIII	CACNNNGTG	1 cut(s)	823
Eam1104I	CTCTTC	3 cut(s)	150, 777, 783
EarI	CTCTTC	3 cut(s)	150, 777, 783
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	418, 610
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	518, 815, 924, 938
FatI	CATG	4 cut(s)	514, 811, 920, 934
FauI	CCCGC	2 cut(s)	131, 905
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	939
Fnu4HI	GCNGC	2 cut(s)	51, 73
FokI	GGATG	4 cut(s)	314, 727, 781, 852
Fsp4HI	GCNGC	2 cut(s)	51, 73
FspBI	CTAG	3 cut(s)	32, 470, 621
GluI	GCNGC	2 cut(s)	51, 73
GsuI	CTGGAG	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	928
Hin1II	CATG	4 cut(s)	518, 815, 924, 938
HincII	GTYRAC	1 cut(s)	932
HindII	GTYRAC	1 cut(s)	932
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	22, 560, 728
HphI	GGTGA	4 cut(s)	179, 256, 569, 884
Hpy166II	GTNNAC	4 cut(s)	817, 926, 932, 940
Hpy188I	TCNGA	5 cut(s)	65, 196, 384, 733, 913
Hpy188III	TCNNGA	4 cut(s)	17, 354, 470, 636
Hpy8I	GTNNAC	4 cut(s)	817, 926, 932, 940
HpyAV	CCTTC	2 cut(s)	118, 911
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	2 cut(s)	220, 928
HpyCH4V	TGCA	7 cut(s)	50, 101, 224, 334, 362, 817, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 871
HpyF3I	CTNAG	3 cut(s)	263, 428, 761
HpySE526I	ACGT	2 cut(s)	220, 928
Hsp92I	GRCGYC	1 cut(s)	928
Hsp92II	CATG	4 cut(s)	518, 815, 924, 938
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	62, 84
LweI	GCATC	4 cut(s)	37, 371, 403, 874
MaeI	CTAG	3 cut(s)	32, 470, 621
MaeII	ACGT	2 cut(s)	220, 928
MaeIII	GTNAC	2 cut(s)	306, 838
MalI	GATC	7 cut(s)	83, 154, 424, 474, 513, 609, 891
MboI	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
MboII	GAAGA	4 cut(s)	137, 422, 794, 800
MfeI	CAATTG	2 cut(s)	846, 854
MflI	RGATCY	2 cut(s)	422, 607
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	6 cut(s)	102, 283, 596, 654, 846, 854
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	8 cut(s)	423, 484, 643, 653, 718, 768, 778, 792
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	2 cut(s)	641, 946
MspR9I	CCNGG	2 cut(s)	420, 612
MunI	CAATTG	2 cut(s)	846, 854
MvaI	CCWGG	2 cut(s)	420, 612
MwoI	GCNNNNNNNGC	2 cut(s)	42, 871
NdeII	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
NlaIII	CATG	4 cut(s)	518, 815, 924, 938
NlaIV	GGNNCC	2 cut(s)	258, 424
NmuCI	GTSAC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	938
PciI	ACATGT	1 cut(s)	934
PciSI	GCTCTTC	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	22, 560, 728
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	52, 74
PscI	ACATGT	1 cut(s)	934
Psp6I	CCWGG	2 cut(s)	418, 610
PspGI	CCWGG	2 cut(s)	418, 610
PspN4I	GGNNCC	2 cut(s)	258, 424
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	422, 607
RsaI	GTAC	2 cut(s)	209, 488
RsaNI	GTAC	2 cut(s)	208, 487
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	2 cut(s)	641, 946
SatI	GCNGC	2 cut(s)	51, 73
Sau3AI	GATC	7 cut(s)	81, 152, 422, 472, 511, 607, 889
ScrFI	CCNGG	2 cut(s)	420, 612
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	4 cut(s)	37, 371, 403, 874
Sse9I	AATT	6 cut(s)	102, 283, 596, 654, 846, 854
SsiI	CCGC	3 cut(s)	138, 260, 898
SspMI	CTAG	3 cut(s)	32, 470, 621
StyD4I	CCNGG	2 cut(s)	418, 610
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	2 cut(s)	223, 931
TaqI	TCGA	1 cut(s)	176
TasI	AATT	6 cut(s)	102, 283, 596, 654, 846, 854
TfiI	GAWTC	3 cut(s)	22, 560, 728
Tru1I	TTAA	2 cut(s)	641, 946
Tru9I	TTAA	2 cut(s)	641, 946
TscAI	CASTG	1 cut(s)	800
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	2 cut(s)	50, 72
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	1 cut(s)	729
TspRI	CASTG	1 cut(s)	800
VneI	GTGCAC	1 cut(s)	815
XapI	RAATTY	2 cut(s)	283, 596
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	1 cut(s)	938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	876
XmaJI	CCTAGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	939
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	3 cut(s)	32, 470, 621
ZraI	GACGTC	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.