Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

38235837 .. 38241532

Gene Structure 5696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTATCCCTTCGAAGCGGCGTATTGGAGATGGTACCCCCTCACTACTTCACTTCCCGATTTTGATAGGAATGGTGAATTGTTGTGGCGTCCGGAAAGGGTCCCGGACTTAGCGGTGGTACGAAAGAAGAAACGCAATATCACGCAATGCTCCGCCTCGATTTCCTTCTTCTCCGAATACAAGAAGGGTCTCACCATCCCCACCAAGGAGATAACCAAGGTCTACGCCGGCGGGGGCGGCGCCTCCGCCTCCGAGGATGATGGCTCCGGGGGTAAGCTGCTGTACTTGTTGGAATATGCGGGGAAGGATTTGAAGCTGGTGAGAATGGGGGTTCCTGTTAGGGATATGGAGAGTGAGAATTTGCTGGATTATTTGGAGGTGTGTTTGGATTTTATTGATAAGAGTAGAAAAGAGGGCTCTGTTTTGGTGCATTGCTTTGCTGGTGTGTCTAGAAGCATCATCATTGCAGCTATCATTACAGCATATCTTATGAGAACAGAACAGTTATCGCAAGAAGATGCACTAGGATCCCTGCGACAGAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAAATCAGCTAAAAATGTACGAAGATATGGGCTTCAAGGTTGATCAAGCCAGCCCCATATATAAGTCTTTTCGCCTCAAAATATTGGGTGAATCTTATTATCGTGGAGATAAAATAGACAGCTCTAAATTTGGTGCTGATCCTGGTTTGCCCAGTGAAGTTACCTCTCAAGTGGAATCATCTCCAATCGGAGGAAAAAATGGGACATCTGCATTTCGCTGCAAAAAATGCCGAAGACTTGTTGCAGTACAGGATAATGTTGTGGACCACATTCCAGGTCAGGGTGAGACATCTTTTGAATGGCGCAAGCGGAAAAGTAGCAACTATAACAACTTCGAGGATTCTGAATGTTCATCCATATTTGTTGAGCCTCTAAAATGGATGACAGCAGTGGAAGAAGGTGCAATGGAGGGCAAGTTGTCCTGTGCACATTGTGAAGCTCGTCTGGGTTACTTCAACTGGTCAGGCATCCAATGCAGTTGCGGGAGCTGGATCACCCCCGCCTTCCAGCTCCATAGAAGCCGAGTGGACATGAGCAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

372

Amino Acids

41.71

Weight (kDa)

6.48

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	106 - 200	8e-22	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	33, 239
AccI	GTMKAC	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	4 cut(s)	522, 535, 707, 1073
AcsI	RAATTY	2 cut(s)	358, 701
AcyI	GRCGYC	2 cut(s)	88, 240
AdeI	CACNNNGTG	1 cut(s)	1007
AfaI	GTAC	5 cut(s)	35, 120, 284, 593, 822
AfiI	CCNNNNNNNGG	4 cut(s)	205, 566, 764, 854
AgsI	TTSAA	4 cut(s)	313, 610, 872, 1030
AjnI	CCWGG	2 cut(s)	715, 847
AluBI	AGCT	9 cut(s)	277, 316, 470, 543, 583, 696, 1013, 1062, 1084
AluI	AGCT	9 cut(s)	277, 316, 470, 543, 583, 696, 1013, 1062, 1084
Alw21I	GWGCWC	1 cut(s)	1003
Alw26I	GTCTC	2 cut(s)	194, 854
Alw44I	GTGCAC	1 cut(s)	999
AlwI	GGATC	4 cut(s)	522, 535, 707, 1073
Aor13HI	TCCGGA	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	999
ApeKI	GCWGC	3 cut(s)	277, 467, 792
ApoI	RAATTY	2 cut(s)	358, 701
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	242, 879
AspS9I	GGNCC	2 cut(s)	100, 838
AsuC2I	CCSGG	2 cut(s)	104, 268
AsuHPI	GGTGA	6 cut(s)	86, 184, 331, 674, 869, 1060
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	100, 838
BaeGI	GKGCMC	1 cut(s)	1003
BamHI	GGATCC	1 cut(s)	527
BanI	GGYRCC	2 cut(s)	33, 239
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	814
Bbv12I	GWGCWC	1 cut(s)	1003
BbvI	GCAGC	3 cut(s)	264, 479, 779
BccI	CCATC	4 cut(s)	24, 203, 254, 560
BciT130I	CCWGG	2 cut(s)	717, 849
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	2 cut(s)	104, 268
BcoDI	GTCTC	2 cut(s)	194, 854
BfaI	CTAG	2 cut(s)	450, 524
BfoI	RGCGCY	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	5 cut(s)	18, 238, 278, 468, 793
BlsI	GCNGC	5 cut(s)	19, 239, 279, 469, 794
Bme1390I	CCNGG	4 cut(s)	104, 268, 717, 849
Bme18I	GGWCC	2 cut(s)	100, 838
BmgT120I	GGNCC	2 cut(s)	100, 838
BmiI	GGNNCC	7 cut(s)	35, 101, 102, 241, 265, 333, 529
BmrFI	CCNGG	4 cut(s)	104, 268, 717, 849
BmrI	ACTGGG	1 cut(s)	720
BmsI	GCATC	3 cut(s)	465, 508, 1050
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	814
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	726
BpuMI	CCSGG	2 cut(s)	104, 268
BsaHI	GRCGYC	2 cut(s)	88, 240
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	204, 216, 252, 267
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 566, 764, 854
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	726, 1037
Bse3DI	GCAATG	4 cut(s)	152, 430, 462, 984
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	717, 849
BseDI	CCNNGG	4 cut(s)	204, 216, 252, 267
BseGI	GGATG	5 cut(s)	195, 262, 926, 960, 1041
BseLI	CCNNNNNNNGG	4 cut(s)	205, 566, 764, 854
BseMI	GCAATG	4 cut(s)	152, 430, 462, 984
BseNI	ACTGG	2 cut(s)	726, 1037
BseSI	GKGCMC	1 cut(s)	1003
BseXI	GCAGC	3 cut(s)	264, 479, 779
BshNI	GGYRCC	2 cut(s)	33, 239
BsiHKAI	GWGCWC	1 cut(s)	1003
BsiSI	CCGG	4 cut(s)	92, 104, 228, 267
BslFI	GGGAC	2 cut(s)	86, 790
BslI	CCNNNNNNNGG	4 cut(s)	205, 566, 764, 854
BsmAI	GTCTC	2 cut(s)	194, 854
BsmFI	GGGAC	2 cut(s)	86, 790
Bso31I	GGTCTC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	419, 1003
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	527, 616, 712, 1065
BspEI	TCCGGA	1 cut(s)	91
BspLI	GGNNCC	7 cut(s)	35, 101, 102, 241, 265, 333, 529
BspPI	GGATC	4 cut(s)	522, 535, 707, 1073
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	33, 239
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	4 cut(s)	152, 430, 462, 984
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	726, 1037
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	4 cut(s)	204, 216, 252, 267
BssMI	GATC	4 cut(s)	527, 616, 712, 1065
BssNI	GRCGYC	2 cut(s)	88, 240
BssT1I	CCWWGG	2 cut(s)	204, 216
Bst2UI	CCWGG	2 cut(s)	717, 849
Bst4CI	ACNGT	1 cut(s)	504
BstACI	GRCGYC	2 cut(s)	88, 240
BstAPI	GCANNNNNTGC	2 cut(s)	801, 1047
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	229, 625, 881
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	5 cut(s)	195, 262, 926, 960, 1041
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	242, 879
BstKTI	GATC	4 cut(s)	530, 619, 715, 1068
BstMAI	GTCTC	2 cut(s)	194, 854
BstMBI	GATC	4 cut(s)	527, 616, 712, 1065
BstMWI	GCNNNNNNNGC	3 cut(s)	237, 801, 1047
BstNI	CCWGG	2 cut(s)	717, 849
BstSCI	CCNGG	4 cut(s)	102, 266, 715, 847
BstSLI	GKGCMC	1 cut(s)	1003
BstV1I	GCAGC	3 cut(s)	264, 479, 779
BstV2I	GAAGAC	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	15
BtsCI	GGATG	5 cut(s)	195, 262, 926, 960, 1041
BtsI	GCAGTG	2 cut(s)	969, 1117
BtsIMutI	CAGTG	3 cut(s)	733, 969, 1117
Cac8I	GCNNGC	3 cut(s)	229, 625, 881
CfoI	GCGC	2 cut(s)	242, 879
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	100, 838
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	5 cut(s)	34, 119, 283, 592, 821
CviAII	CATG	1 cut(s)	1105
CviQI	GTAC	5 cut(s)	34, 119, 283, 592, 821
DdeI	CTNAG	1 cut(s)	109
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	4 cut(s)	529, 618, 714, 1067
DpnII	GATC	4 cut(s)	527, 616, 712, 1065
DraIII	CACNNNGTG	1 cut(s)	1007
EciI	GGCGGA	2 cut(s)	142, 235
Eco130I	CCWWGG	2 cut(s)	204, 216
Eco24I	GRGCYC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	100, 838
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	715, 847
EcoT14I	CCWWGG	2 cut(s)	204, 216
EcoT38I	GRGCYC	1 cut(s)	419
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	204, 216
FaeI	CATG	1 cut(s)	1108
FaqI	GGGAC	2 cut(s)	86, 790
FatI	CATG	1 cut(s)	1104
FauI	CCCGC	4 cut(s)	224, 292, 1049, 1081
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	18, 238, 278, 468, 793
FokI	GGATG	5 cut(s)	182, 269, 913, 967, 1028
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	5 cut(s)	18, 238, 278, 468, 793
FspBI	CTAG	2 cut(s)	450, 524
GlaI	GCGC	2 cut(s)	241, 878
GluI	GCNGC	5 cut(s)	18, 238, 278, 468, 793
HaeII	RGCGCY	1 cut(s)	243
HapII	CCGG	4 cut(s)	92, 104, 228, 267
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	2 cut(s)	242, 879
Hin1I	GRCGYC	2 cut(s)	88, 240
Hin1II	CATG	1 cut(s)	1108
Hin6I	GCGC	2 cut(s)	240, 877
HinP1I	GCGC	2 cut(s)	240, 877
HinfI	GANTC	3 cut(s)	665, 749, 914
HpaII	CCGG	4 cut(s)	92, 104, 228, 267
HphI	GGTGA	6 cut(s)	86, 184, 331, 674, 869, 1060
Hpy166II	GTNNAC	4 cut(s)	223, 838, 1001, 1102
Hpy188I	TCNGA	4 cut(s)	175, 253, 764, 919
Hpy188III	TCNNGA	3 cut(s)	56, 92, 450
Hpy8I	GTNNAC	4 cut(s)	223, 838, 1001, 1102
HpyAV	CCTTC	6 cut(s)	19, 175, 178, 298, 965, 1087
HpyCH4III	ACNGT	1 cut(s)	504
HpyCH4V	TGCA	9 cut(s)	430, 467, 521, 785, 795, 818, 977, 1001, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	237, 801, 1047
HpyF3I	CTNAG	1 cut(s)	109
Hsp92I	GRCGYC	2 cut(s)	88, 240
Hsp92II	CATG	1 cut(s)	1108
HspAI	GCGC	2 cut(s)	240, 877
KasI	GGCGCC	1 cut(s)	239
KflI	GGGWCCC	1 cut(s)	100
Kpn2I	TCCGGA	1 cut(s)	91
KpnI	GGTACC	1 cut(s)	37
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	527, 616, 712, 1065
LmnI	GCTCC	4 cut(s)	155, 269, 1059, 1089
Lsp1109I	GCAGC	3 cut(s)	264, 479, 779
LweI	GCATC	3 cut(s)	465, 508, 1050
MaeI	CTAG	2 cut(s)	450, 524
MaeIII	GTNAC	2 cut(s)	733, 1022
MalI	GATC	4 cut(s)	529, 618, 714, 1067
MboI	GATC	4 cut(s)	527, 616, 712, 1065
MboII	GAAGA	6 cut(s)	139, 160, 527, 608, 819, 980
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	2 cut(s)	419, 1003
MluCI	AATT	3 cut(s)	77, 358, 701
Mly113I	GGCGCC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	270
MreI	CGCCGGCG	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	227
MspI	CCGG	4 cut(s)	92, 104, 228, 267
MspR9I	CCNGG	4 cut(s)	104, 268, 717, 849
MvaI	CCWGG	2 cut(s)	717, 849
MwoI	GCNNNNNNNGC	3 cut(s)	237, 801, 1047
NaeI	GCCGGC	1 cut(s)	229
NarI	GGCGCC	1 cut(s)	240
NciI	CCSGG	2 cut(s)	104, 268
NdeII	GATC	4 cut(s)	527, 616, 712, 1065
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	1 cut(s)	1108
NlaIV	GGNNCC	7 cut(s)	35, 101, 102, 241, 265, 333, 529
NspV	TTCGAA	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	665, 749, 914
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	5 cut(s)	19, 239, 279, 469, 794
PluTI	GGCGCC	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	715, 847
PspGI	CCWGG	2 cut(s)	715, 847
PspN4I	GGNNCC	7 cut(s)	35, 101, 102, 241, 265, 333, 529
PspPI	GGNCC	2 cut(s)	100, 838
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	527
RsaI	GTAC	5 cut(s)	35, 120, 284, 593, 822
RsaNI	GTAC	5 cut(s)	34, 119, 283, 592, 821
SatI	GCNGC	5 cut(s)	18, 238, 278, 468, 793
Sau3AI	GATC	4 cut(s)	527, 616, 712, 1065
Sau96I	GGNCC	2 cut(s)	100, 838
ScrFI	CCNGG	4 cut(s)	104, 268, 717, 849
SduI	GDGCHC	2 cut(s)	419, 1003
SfaNI	GCATC	3 cut(s)	465, 508, 1050
SfoI	GGCGCC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	12
SgrAI	CRCCGGYG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	100, 838
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
Sse9I	AATT	3 cut(s)	77, 358, 701
SspDI	GGCGCC	1 cut(s)	239
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	2 cut(s)	450, 524
StyD4I	CCNGG	4 cut(s)	102, 266, 715, 847
StyI	CCWWGG	2 cut(s)	204, 216
TaaI	ACNGT	1 cut(s)	504
TaqI	TCGA	3 cut(s)	12, 158, 909
TasI	AATT	3 cut(s)	77, 358, 701
TatI	WGTACW	2 cut(s)	282, 820
TauI	GCSGC	2 cut(s)	20, 240
TfiI	GAWTC	3 cut(s)	665, 749, 914
TscAI	CASTG	3 cut(s)	733, 969, 1117
TseI	GCWGC	3 cut(s)	277, 467, 792
TspDTI	ATGAA	1 cut(s)	915
TspRI	CASTG	3 cut(s)	733, 969, 1117
VneI	GTGCAC	1 cut(s)	999
VpaK11BI	GGWCC	2 cut(s)	100, 838
XapI	RAATTY	2 cut(s)	358, 701
XbaI	TCTAGA	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	450, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.