Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015042.1

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

12317 .. 15025

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015042.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgccgcacctcgttcgcgagaatctcttcatcggcaacatcaccgacgcagtcgacgtactccagaacggcagcgccaccgtcactcatattctctccgtcctcagctccgcctcgatttccttcttctccgaatacaagaagggtctcaccatccccaccaaggagataaccaaggtctacgccggcgggggcggcgcctccgcctccgaggatgatggctccgggggtaagctgctgtacttgttggaatatgcggggaaggatttgaaactggtgagaatgggggttcctgttagggatatggagagtgagaatttgctggattatttggaggtgtgtttggattttattgataagagtagaaaagaggggtctgttttggtgcattgctttgctggtgtgtctagaagtcaaaactgttcaccggcgatcatgccgcacctagttcgcgagaatctcttcatcggcaacatcaccgacgccgtcgacgtactccaaaacggcagcgccaccgtcactcatattctctccgttctcagctccgcctcgatttccttcttctccgaatacaagaagggtctcaccatccccaccaaggagataaccaaggtctacgccggcggcggcgcctccgcctccgaggatggctccgggggtaagctgctgtacttgttggaatatgcggggaaggatttgaagctggtgagaatgggggttcctgttagggatatggagagtgagaatttgctggattatttggagttgaaaagcaatgatagtgtagggttaaaattgatccttgcgagcacagccaatcttatgagaacagaacagttatcgcaagaagatgcactaggatccctgcgacagagctgtgagtttgtttgccccaatgatggttttctaaatcagctaaaaatgtacgaagatatgggcttcaaggttgatcaagccagccccatatataagtcttttcgcctcaaaatattgggtactctacttttcttctgtttcaccttttttctggttggtctgcctcaatcaaggatattgatttatatgttatgcatttatgtctacataattctagttttccaacattatgtgagcgaaatgttccatggacacagagtaggctctaatgcatatgctatcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

387

Amino Acids

42.53

Weight (kDa)

5.68

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 629
AccI	GTMKAC	5 cut(s)	54, 180, 489, 615, 1080
AccII	CGCG	2 cut(s)	18, 453
AclWI	GGATC	3 cut(s)	793, 855, 868
AcsI	RAATTY	2 cut(s)	316, 745
AcyI	GRCGYC	3 cut(s)	198, 483, 630
AfaI	GTAC	6 cut(s)	60, 242, 495, 671, 926, 997
AfiI	CCNNNNNNNGG	3 cut(s)	163, 598, 899
AgsI	TTSAA	4 cut(s)	271, 700, 769, 943
AluBI	AGCT	7 cut(s)	108, 235, 543, 664, 703, 876, 916
AluI	AGCT	7 cut(s)	108, 235, 543, 664, 703, 876, 916
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	2 cut(s)	152, 587
AlwI	GGATC	3 cut(s)	793, 855, 868
ApeKI	GCWGC	4 cut(s)	72, 235, 507, 664
ApoI	RAATTY	2 cut(s)	316, 745
Asp700I	GAANNNNTTC	2 cut(s)	26, 461
AspLEI	GCGC	4 cut(s)	77, 200, 512, 632
AsuC2I	CCSGG	2 cut(s)	226, 655
AsuHPI	GGTGA	8 cut(s)	34, 142, 289, 417, 469, 577, 718, 1009
BamHI	GGATCC	1 cut(s)	860
BanI	GGYRCC	2 cut(s)	197, 629
Bbv12I	GWGCWC	1 cut(s)	812
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	84, 222, 519, 651
BccI	CCATC	5 cut(s)	161, 212, 596, 641, 893
BceAI	ACGGC	3 cut(s)	85, 470, 520
BcgI	CGANNNNNNTGC	3 cut(s)	30, 431, 465
BclI	TGATCA	1 cut(s)	949
BcnI	CCSGG	2 cut(s)	226, 655
BcoDI	GTCTC	2 cut(s)	152, 587
BfaI	CTAG	4 cut(s)	408, 446, 857, 1091
BfoI	RGCGCY	4 cut(s)	78, 201, 513, 633
BisI	GCNGC	9 cut(s)	5, 73, 196, 236, 440, 508, 625, 628, 665
BlsI	GCNGC	9 cut(s)	6, 74, 197, 237, 441, 509, 626, 629, 666
Bme1390I	CCNGG	2 cut(s)	226, 655
BmiI	GGNNCC	7 cut(s)	199, 223, 291, 631, 652, 720, 862
BmrFI	CCNGG	2 cut(s)	226, 655
BmsI	GCATC	1 cut(s)	841
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	226, 655
BsaHI	GRCGYC	3 cut(s)	198, 483, 630
BsaI	GGTCTC	2 cut(s)	152, 587
BsaJI	CCNNGG	9 cut(s)	162, 174, 210, 225, 597, 609, 642, 654, 1123
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 598, 899
Bse118I	RCCGGY	3 cut(s)	185, 427, 620
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	2 cut(s)	388, 781
BseDI	CCNNGG	9 cut(s)	162, 174, 210, 225, 597, 609, 642, 654, 1123
BseGI	GGATG	4 cut(s)	153, 220, 588, 652
BseLI	CCNNNNNNNGG	3 cut(s)	163, 598, 899
BseMI	GCAATG	2 cut(s)	388, 781
BseMII	CTCAG	2 cut(s)	118, 553
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	84, 222, 519, 651
Bsh1236I	CGCG	2 cut(s)	18, 453
BshNI	GGYRCC	2 cut(s)	197, 629
BsiHKAI	GWGCWC	1 cut(s)	812
BsiSI	CCGG	5 cut(s)	186, 225, 428, 621, 654
BslI	CCNNNNNNNGG	3 cut(s)	163, 598, 899
BsmAI	GTCTC	2 cut(s)	152, 587
Bso31I	GGTCTC	2 cut(s)	152, 587
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp143I	GATC	4 cut(s)	432, 798, 860, 949
Bsp19I	CCATGG	1 cut(s)	1123
Bsp68I	TCGCGA	2 cut(s)	18, 453
BspCNI	CTCAG	2 cut(s)	117, 552
BspFNI	CGCG	2 cut(s)	18, 453
BspLI	GGNNCC	7 cut(s)	199, 223, 291, 631, 652, 720, 862
BspPI	GGATC	3 cut(s)	793, 855, 868
BspT107I	GGYRCC	2 cut(s)	197, 629
BspTNI	GGTCTC	2 cut(s)	152, 587
BsrDI	GCAATG	2 cut(s)	388, 781
BsrFI	RCCGGY	3 cut(s)	185, 427, 620
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	3 cut(s)	185, 427, 620
BssECI	CCNNGG	9 cut(s)	162, 174, 210, 225, 597, 609, 642, 654, 1123
BssMI	GATC	4 cut(s)	432, 798, 860, 949
BssNI	GRCGYC	3 cut(s)	198, 483, 630
BssT1I	CCWWGG	5 cut(s)	162, 174, 597, 609, 1123
Bst4CI	ACNGT	4 cut(s)	82, 422, 517, 837
Bst6I	CTCTTC	2 cut(s)	32, 467
BstACI	GRCGYC	3 cut(s)	198, 483, 630
BstC8I	GCNNGC	4 cut(s)	187, 622, 808, 958
BstDEI	CTNAG	2 cut(s)	104, 539
BstDSI	CCRYGG	1 cut(s)	1123
BstF5I	GGATG	4 cut(s)	153, 220, 588, 652
BstFNI	CGCG	2 cut(s)	18, 453
BstH2I	RGCGCY	4 cut(s)	78, 201, 513, 633
BstHHI	GCGC	4 cut(s)	77, 200, 512, 632
BstKTI	GATC	4 cut(s)	435, 801, 863, 952
BstMAI	GTCTC	2 cut(s)	152, 587
BstMBI	GATC	4 cut(s)	432, 798, 860, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 812
BstSCI	CCNGG	2 cut(s)	224, 653
BstUI	CGCG	2 cut(s)	18, 453
BstV1I	GCAGC	4 cut(s)	84, 222, 519, 651
BstX2I	RGATCY	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	860
BtgI	CCRYGG	1 cut(s)	1123
BtsCI	GGATG	4 cut(s)	153, 220, 588, 652
BtuMI	TCGCGA	2 cut(s)	18, 453
Cac8I	GCNNGC	4 cut(s)	187, 622, 808, 958
CfoI	GCGC	4 cut(s)	77, 200, 512, 632
Cfr10I	RCCGGY	3 cut(s)	185, 427, 620
CseI	GACGC	2 cut(s)	56, 491
Csp6I	GTAC	6 cut(s)	59, 241, 494, 670, 925, 996
CviAII	CATG	2 cut(s)	436, 1124
CviQI	GTAC	6 cut(s)	59, 241, 494, 670, 925, 996
DdeI	CTNAG	2 cut(s)	104, 539
DinI	GGCGCC	2 cut(s)	199, 631
DpnI	GATC	4 cut(s)	434, 800, 862, 951
DpnII	GATC	4 cut(s)	432, 798, 860, 949
Eam1104I	CTCTTC	2 cut(s)	32, 467
EarI	CTCTTC	2 cut(s)	32, 467
EciI	GGCGGA	4 cut(s)	100, 193, 535, 625
Eco130I	CCWWGG	5 cut(s)	162, 174, 597, 609, 1123
Eco31I	GGTCTC	2 cut(s)	152, 587
EcoT14I	CCWWGG	5 cut(s)	162, 174, 597, 609, 1123
EcoT22I	ATGCAT	2 cut(s)	1073, 1150
EgeI	GGCGCC	2 cut(s)	199, 631
EheI	GGCGCC	2 cut(s)	199, 631
ErhI	CCWWGG	5 cut(s)	162, 174, 597, 609, 1123
FaeI	CATG	2 cut(s)	439, 1127
FatI	CATG	2 cut(s)	435, 1123
FauI	CCCGC	3 cut(s)	182, 250, 679
FauNDI	CATATG	1 cut(s)	1150
FbaI	TGATCA	1 cut(s)	949
FblI	GTMKAC	5 cut(s)	54, 180, 489, 615, 1080
Fnu4HI	GCNGC	9 cut(s)	5, 73, 196, 236, 440, 508, 625, 628, 665
FokI	GGATG	4 cut(s)	140, 227, 575, 659
Fsp4HI	GCNGC	9 cut(s)	5, 73, 196, 236, 440, 508, 625, 628, 665
FspBI	CTAG	4 cut(s)	408, 446, 857, 1091
GlaI	GCGC	4 cut(s)	76, 199, 511, 631
GluI	GCNGC	9 cut(s)	5, 73, 196, 236, 440, 508, 625, 628, 665
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	4 cut(s)	78, 201, 513, 633
HapII	CCGG	5 cut(s)	186, 225, 428, 621, 654
HgaI	GACGC	2 cut(s)	56, 491
HhaI	GCGC	4 cut(s)	77, 200, 512, 632
Hin1I	GRCGYC	3 cut(s)	198, 483, 630
Hin1II	CATG	2 cut(s)	439, 1127
Hin6I	GCGC	4 cut(s)	75, 198, 510, 630
HinP1I	GCGC	4 cut(s)	75, 198, 510, 630
HincII	GTYRAC	2 cut(s)	55, 490
HindII	GTYRAC	2 cut(s)	55, 490
HinfI	GANTC	2 cut(s)	22, 457
HpaII	CCGG	5 cut(s)	186, 225, 428, 621, 654
HphI	GGTGA	8 cut(s)	34, 142, 289, 417, 469, 577, 718, 1009
Hpy166II	GTNNAC	6 cut(s)	55, 181, 425, 490, 616, 1081
Hpy188I	TCNGA	4 cut(s)	133, 211, 568, 643
Hpy188III	TCNNGA	4 cut(s)	17, 64, 408, 452
Hpy8I	GTNNAC	6 cut(s)	55, 181, 425, 490, 616, 1081
Hpy99I	CGWCG	5 cut(s)	50, 59, 485, 491, 494
HpyAV	CCTTC	6 cut(s)	133, 136, 256, 568, 571, 685
HpyCH4III	ACNGT	4 cut(s)	82, 422, 517, 837
HpyCH4IV	ACGT	2 cut(s)	57, 492
HpyCH4V	TGCA	4 cut(s)	388, 854, 1071, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 812
HpyF3I	CTNAG	2 cut(s)	104, 539
HpySE526I	ACGT	2 cut(s)	57, 492
Hsp92I	GRCGYC	3 cut(s)	198, 483, 630
Hsp92II	CATG	2 cut(s)	439, 1127
HspAI	GCGC	4 cut(s)	75, 198, 510, 630
KasI	GGCGCC	2 cut(s)	197, 629
KroI	GCCGGC	2 cut(s)	185, 620
KroNI	GCCGGC	2 cut(s)	187, 622
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	432, 798, 860, 949
LmnI	GCTCC	4 cut(s)	113, 227, 548, 656
Lsp1109I	GCAGC	4 cut(s)	84, 222, 519, 651
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	4 cut(s)	408, 446, 857, 1091
MaeII	ACGT	2 cut(s)	57, 492
MaeIII	GTNAC	2 cut(s)	82, 517
MalI	GATC	4 cut(s)	434, 800, 862, 951
MboI	GATC	4 cut(s)	432, 798, 860, 949
MboII	GAAGA	7 cut(s)	19, 118, 454, 553, 860, 941, 1000
MfeI	CAATTG	1 cut(s)	1159
MflI	RGATCY	1 cut(s)	860
MhlI	GDGCHC	1 cut(s)	812
MluCI	AATT	5 cut(s)	316, 745, 794, 1086, 1159
Mly113I	GGCGCC	2 cut(s)	198, 630
MmeI	TCCRAC	3 cut(s)	228, 657, 1123
Mph1103I	ATGCAT	2 cut(s)	1073, 1150
MreI	CGCCGGCG	2 cut(s)	185, 620
MroNI	GCCGGC	2 cut(s)	185, 620
MroXI	GAANNNNTTC	2 cut(s)	26, 461
MseI	TTAA	1 cut(s)	791
MspI	CCGG	5 cut(s)	186, 225, 428, 621, 654
MspR9I	CCNGG	2 cut(s)	226, 655
MunI	CAATTG	1 cut(s)	1159
MvnI	CGCG	2 cut(s)	18, 453
MwoI	GCNNNNNNNGC	2 cut(s)	195, 812
NaeI	GCCGGC	2 cut(s)	187, 622
NarI	GGCGCC	2 cut(s)	198, 630
NciI	CCSGG	2 cut(s)	226, 655
NcoI	CCATGG	1 cut(s)	1123
NdeI	CATATG	1 cut(s)	1150
NdeII	GATC	4 cut(s)	432, 798, 860, 949
NgoMIV	GCCGGC	2 cut(s)	185, 620
NlaIII	CATG	2 cut(s)	439, 1127
NlaIV	GGNNCC	7 cut(s)	199, 223, 291, 631, 652, 720, 862
NmuCI	GTSAC	2 cut(s)	82, 517
NruI	TCGCGA	2 cut(s)	18, 453
NsiI	ATGCAT	2 cut(s)	1073, 1150
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 489
PdiI	GCCGGC	2 cut(s)	187, 622
PdmI	GAANNNNTTC	2 cut(s)	26, 461
PfeI	GAWTC	2 cut(s)	22, 457
PflFI	GACNNNGTC	2 cut(s)	50, 485
PkrI	GCNGC	9 cut(s)	6, 74, 197, 237, 441, 509, 626, 629, 666
PluTI	GGCGCC	2 cut(s)	201, 633
PspN4I	GGNNCC	7 cut(s)	199, 223, 291, 631, 652, 720, 862
PsuI	RGATCY	1 cut(s)	860
PsyI	GACNNNGTC	2 cut(s)	50, 485
RruI	TCGCGA	2 cut(s)	18, 453
RsaI	GTAC	6 cut(s)	60, 242, 495, 671, 926, 997
RsaNI	GTAC	6 cut(s)	59, 241, 494, 670, 925, 996
SalI	GTCGAC	2 cut(s)	53, 488
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	9 cut(s)	5, 73, 196, 236, 440, 508, 625, 628, 665
Sau3AI	GATC	4 cut(s)	432, 798, 860, 949
ScrFI	CCNGG	2 cut(s)	226, 655
SduI	GDGCHC	1 cut(s)	812
SfaNI	GCATC	1 cut(s)	841
SfoI	GGCGCC	2 cut(s)	199, 631
SgrAI	CRCCGGYG	3 cut(s)	185, 427, 620
SgrDI	CGTCGACG	1 cut(s)	488
Sse9I	AATT	5 cut(s)	316, 745, 794, 1086, 1159
SspDI	GGCGCC	2 cut(s)	197, 629
SspI	AATATT	1 cut(s)	990
SspMI	CTAG	4 cut(s)	408, 446, 857, 1091
StyD4I	CCNGG	2 cut(s)	224, 653
StyI	CCWWGG	5 cut(s)	162, 174, 597, 609, 1123
TaaI	ACNGT	4 cut(s)	82, 422, 517, 837
TaiI	ACGT	2 cut(s)	60, 495
TaqI	TCGA	4 cut(s)	54, 116, 489, 551
TasI	AATT	5 cut(s)	316, 745, 794, 1086, 1159
TatI	WGTACW	2 cut(s)	240, 669
TauI	GCSGC	5 cut(s)	7, 198, 442, 627, 630
TfiI	GAWTC	2 cut(s)	22, 457
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TseFI	GTSAC	2 cut(s)	82, 517
TseI	GCWGC	4 cut(s)	72, 235, 507, 664
Tsp45I	GTSAC	2 cut(s)	82, 517
TspDTI	ATGAA	2 cut(s)	19, 454
TspGWI	ACGGA	2 cut(s)	88, 523
Tth111I	GACNNNGTC	2 cut(s)	50, 485
XapI	RAATTY	2 cut(s)	316, 745
XbaI	TCTAGA	1 cut(s)	407
XmiI	GTMKAC	5 cut(s)	54, 180, 489, 615, 1080
XmnI	GAANNNNTTC	2 cut(s)	26, 461
XspI	CTAG	4 cut(s)	408, 446, 857, 1091
Zsp2I	ATGCAT	2 cut(s)	1073, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.