Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

38186018 .. 38190649

Gene Structure 4632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCCACTGAGAAAAGCGAGAGCTTGGAAATGGACCTGTTATCATGCCCCGTATGCTATGTACCGCTAATTCGAAAAGGCCCAACTGGTCTCAACTTTGCAGCTATCATTACAGCATATCTTATGAGAACAGAACAGTTATCGCAGGAAGGTGAATCTTATTATCGCGGAGATAAAATAGACAGCTCTAAATTTGGTGCTGATCCTGGTTTGCCCAGTGAAGTTACCTCTCAAGTGGAATCATCTCCAATTGGAGGAAAAACTGGGACATCTACATTTCGCTGCAAAAAATGCCGAAGACTTGTTGCAGTACAGGATAATGTTGTGGACCACATTCCAGGTCAGGGTGAGACATCTTTTGAATGGCGCAAGCGGAAAAGTAGCAACTATAACAACTTTGAGGATTCTGAATGTTCATCCATATTTTGGAAGAAGGTGCAATGGAAGGCAAGTTGTCCTGTGCACATTGTGAAGCTCGTCTGGGTTACTTCAACTGGTCAGGCATCCAATGCAGTTGCGGGAGCTGGATCACCCCCGCCTTCCAGCTCCATAGAAGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

187

Amino Acids

20.41

Weight (kDa)

6.74

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	426
AccII	CGCG	1 cut(s)	168
AciI	CCGC	5 cut(s)	65, 168, 373, 518, 536
AclWI	GGATC	2 cut(s)	197, 535
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	469
AfaI	GTAC	2 cut(s)	63, 312
AfiI	CCNNNNNNNGG	3 cut(s)	254, 344, 426
AgsI	TTSAA	2 cut(s)	362, 492
AjnI	CCWGG	2 cut(s)	205, 337
AluBI	AGCT	6 cut(s)	24, 104, 186, 475, 524, 546
AluI	AGCT	6 cut(s)	24, 104, 186, 475, 524, 546
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	95, 344
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	197, 535
AoxI	GGCC	2 cut(s)	3, 79
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	101, 282
ApoI	RAATTY	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	3 cut(s)	34, 80, 328
AsuHPI	GGTGA	3 cut(s)	164, 359, 522
AsuII	TTCGAA	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	34, 328
BaeGI	GKGCMC	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	113, 269
BciT130I	CCWGG	2 cut(s)	207, 339
BcoDI	GTCTC	2 cut(s)	95, 344
BisI	GCNGC	2 cut(s)	102, 283
BlsI	GCNGC	2 cut(s)	103, 284
Bme1390I	CCNGG	2 cut(s)	207, 339
Bme18I	GGWCC	2 cut(s)	34, 328
BmgT120I	GGNCC	3 cut(s)	34, 80, 328
BmrFI	CCNGG	2 cut(s)	207, 339
BmrI	ACTGGG	2 cut(s)	210, 273
BmsI	GCATC	1 cut(s)	512
BmuI	ACTGGG	2 cut(s)	210, 273
BpiI	GAAGAC	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 344, 426
Bse1I	ACTGG	4 cut(s)	91, 216, 268, 499
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	207, 339
BseGI	GGATG	2 cut(s)	416, 503
BseLI	CCNNNNNNNGG	3 cut(s)	254, 344, 426
BseMI	GCAATG	1 cut(s)	446
BseNI	ACTGG	4 cut(s)	91, 216, 268, 499
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	113, 269
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	5, 81
BsiHKAI	GWGCWC	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	254, 344, 426
BsmAI	GTCTC	2 cut(s)	95, 344
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	5, 81
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	202, 527
BspACI	CCGC	5 cut(s)	65, 168, 373, 518, 536
BspANI	GGCC	2 cut(s)	5, 81
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	2 cut(s)	197, 535
BspT104I	TTCGAA	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	4 cut(s)	91, 216, 268, 499
BssMI	GATC	2 cut(s)	202, 527
Bst2UI	CCWGG	2 cut(s)	207, 339
Bst4CI	ACNGT	1 cut(s)	138
BstAPI	GCANNNNNTGC	2 cut(s)	291, 509
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	416, 503
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	205, 530
BstMAI	GTCTC	2 cut(s)	95, 344
BstMBI	GATC	2 cut(s)	202, 527
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 291, 509
BstNI	CCWGG	2 cut(s)	207, 339
BstSCI	CCNGG	2 cut(s)	205, 337
BstSLI	GKGCMC	1 cut(s)	465
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	113, 269
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	5, 81
BtsCI	GGATG	2 cut(s)	416, 503
BtsIMutI	CAGTG	2 cut(s)	6, 223
Cac8I	GCNNGC	1 cut(s)	371
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	3 cut(s)	34, 80, 328
Csp6I	GTAC	2 cut(s)	62, 311
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	9 cut(s)	5, 24, 81, 104, 186, 475, 524, 546, 557
CviKI_1	RGCY	9 cut(s)	5, 24, 81, 104, 186, 475, 524, 546, 557
CviQI	GTAC	2 cut(s)	62, 311
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	204, 529
DpnII	GATC	2 cut(s)	202, 527
DraIII	CACNNNGTG	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	34, 328
EcoRII	CCWGG	2 cut(s)	205, 337
FaeI	CATG	1 cut(s)	48
FaiI	YATR	8 cut(s)	46, 55, 60, 118, 125, 390, 422, 551
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	44
FauI	CCCGC	2 cut(s)	511, 543
Fnu4HI	GCNGC	2 cut(s)	102, 283
FokI	GGATG	2 cut(s)	403, 490
Fsp4HI	GCNGC	2 cut(s)	102, 283
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	102, 283
HaeIII	GGCC	2 cut(s)	5, 81
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	3 cut(s)	155, 239, 404
HphI	GGTGA	3 cut(s)	164, 359, 522
Hpy166II	GTNNAC	2 cut(s)	328, 463
Hpy188I	TCNGA	1 cut(s)	409
Hpy8I	GTNNAC	2 cut(s)	328, 463
HpyAV	CCTTC	4 cut(s)	143, 427, 439, 549
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	6 cut(s)	101, 285, 308, 439, 463, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 291, 509
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	202, 527
LmnI	GCTCC	2 cut(s)	521, 551
Lsp1109I	GCAGC	2 cut(s)	113, 269
LweI	GCATC	1 cut(s)	512
MaeIII	GTNAC	2 cut(s)	223, 484
MalI	GATC	2 cut(s)	204, 529
MboI	GATC	2 cut(s)	202, 527
MboII	GAAGA	2 cut(s)	309, 442
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	465
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	69, 191, 249
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	238, 248, 394
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	207, 339
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	2 cut(s)	207, 339
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	54, 291, 509
NdeII	GATC	2 cut(s)	202, 527
NlaIII	CATG	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	155, 239, 404
PflMI	CCANNNNNTGG	1 cut(s)	426
PkrI	GCNGC	2 cut(s)	103, 284
Psp6I	CCWGG	2 cut(s)	205, 337
PspGI	CCWGG	2 cut(s)	205, 337
PspPI	GGNCC	3 cut(s)	34, 80, 328
RsaI	GTAC	2 cut(s)	63, 312
RsaNI	GTAC	2 cut(s)	62, 311
SatI	GCNGC	2 cut(s)	102, 283
Sau3AI	GATC	2 cut(s)	202, 527
Sau96I	GGNCC	3 cut(s)	34, 80, 328
ScrFI	CCNGG	2 cut(s)	207, 339
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	512
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	2 cut(s)	34, 328
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	69, 191, 249
SsiI	CCGC	5 cut(s)	65, 168, 373, 518, 536
StyD4I	CCNGG	2 cut(s)	205, 337
TaaI	ACNGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	69, 191, 249
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	155, 239, 404
TscAI	CASTG	2 cut(s)	13, 223
TseI	GCWGC	2 cut(s)	101, 282
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	2 cut(s)	13, 223
Van91I	CCANNNNNTGG	1 cut(s)	426
VneI	GTGCAC	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	34, 328
XapI	RAATTY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.