Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

6521957 .. 6527732

Gene Structure 5776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGTTGGATGTTCCGGAAATCAAGAAGGTCTATGCTGGCGGGTCTGTTGGTGGGTCAACTTCTGTTGGTGATGGGTCGAAAACTTGTTTGTTTTCCGATAAGCTTTCGTACTCGTTGGAACGTGCAGGCAAGGATTTGAAGCTGGAGAGGATGGGGGTTCCGCTAAGAGATATGGACGATGAGAATTTATTGGATTATTTGGATGTTGCATCTATCATTACGGCATATCTGATGAGAACAGAACATTTATCACAAGAAGATGCACTAGGATCCCTGAGGCAAAGCTATGAGTTTGTTTGCCCCAATGATGGTTTTCTAGATCAGGTTATATTACTTTCTGCTAAGATTTTACTCTTTTCTCTTATTGTGTTGCAACTCAAAATGTACGATGAAATGGGCTTCAAGGTTGATCGTGCCAGCCCCATATGTGAATCTTATCATCGTGGGGATAAAATAGACAATTCTAAATTTGGGGCAGATCCTGGGTTGCCTAGTGAAGTTGCCTCTGGAGTAAAAACAGGTCAAAATGGAGGAAAAACTGGTACACCAGCATTCCGCTGCAAGAAATGCCGAAGAATTGTTGCATTGCAGGACAATGTTGTGGATCACATTCCAGGTGAGGGCGGGAAATCATTTGAGTGGCGAAAGCGAAAAAGTAGCAACTTGTCTGAGGATTCTGAATGTTCATCCATTTTTGTTGAGCCTCTAAGGTGGATGACAGCAGTTGAAGAAGGAGCACTGGAGGGCAAGTTGTCATGTGCACATTTTGAAGCTTGCTTGGGTTACTTCAATTGGTCAGGCAGCCAATGCAGTTGCGGGAGTTGGATCACTACTGCCTTCCAGCTTCATAGAAGCCGTGTGGACGTCAGCACTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

294

Amino Acids

32.2

Weight (kDa)

5.5

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	870
AccIII	TCCGGA	1 cut(s)	16
AciI	CCGC	5 cut(s)	42, 164, 559, 627, 819
AclWI	GGATC	5 cut(s)	267, 280, 476, 615, 836
AcsI	RAATTY	2 cut(s)	187, 470
AcyI	GRCGYC	1 cut(s)	867
AfaI	GTAC	3 cut(s)	113, 389, 547
AfiI	CCNNNNNNNGG	2 cut(s)	311, 623
AgsI	TTSAA	5 cut(s)	142, 406, 731, 773, 793
AjnI	CCWGG	2 cut(s)	484, 616
AluBI	AGCT	5 cut(s)	106, 145, 288, 776, 847
AluI	AGCT	5 cut(s)	106, 145, 288, 776, 847
Alw21I	GWGCWC	2 cut(s)	742, 766
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	5 cut(s)	267, 280, 476, 615, 836
AlwNI	CAGNNNCTG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	16
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	2 cut(s)	561, 804
ApoI	RAATTY	2 cut(s)	187, 470
AsuHPI	GGTGA	2 cut(s)	83, 632
AxyI	CCTNAGG	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	766
BamHI	GGATCC	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	742, 766
BbvI	GCAGC	2 cut(s)	548, 816
BccI	CCATC	3 cut(s)	68, 148, 305
BceAI	ACGGC	2 cut(s)	240, 843
BciT130I	CCWGG	2 cut(s)	486, 618
BfaI	CTAG	3 cut(s)	269, 320, 495
BisI	GCNGC	2 cut(s)	562, 805
BlsI	GCNGC	2 cut(s)	563, 806
Bme1390I	CCNGG	2 cut(s)	486, 618
BmiI	GGNNCC	2 cut(s)	162, 274
BmrFI	CCNGG	2 cut(s)	486, 618
BmsI	GCATC	2 cut(s)	221, 253
BpmI	CTGGAG	3 cut(s)	167, 531, 764
BsaHI	GRCGYC	1 cut(s)	867
BsaJI	CCNNGG	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 623
Bse1I	ACTGG	2 cut(s)	547, 747
Bse21I	CCTNAGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	587
BseAI	TCCGGA	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	486, 618
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	5 cut(s)	16, 159, 211, 689, 723
BseLI	CCNNNNNNNGG	2 cut(s)	311, 623
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	2 cut(s)	269, 663
BseNI	ACTGG	2 cut(s)	547, 747
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	2 cut(s)	548, 816
BsgI	GTGCAG	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	742, 766
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	311, 623
BsmI	GAATGC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	742, 766
Bsp13I	TCCGGA	1 cut(s)	16
Bsp143I	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
BspACI	CCGC	5 cut(s)	42, 164, 559, 627, 819
BspCNI	CTCAG	2 cut(s)	270, 664
BspEI	TCCGGA	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	162, 274
BspPI	GGATC	5 cut(s)	267, 280, 476, 615, 836
BsrDI	GCAATG	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	547, 747
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
BssNI	GRCGYC	1 cut(s)	867
Bst2UI	CCWGG	2 cut(s)	486, 618
Bst4CI	ACNGT	1 cut(s)	877
BstACI	GRCGYC	1 cut(s)	867
BstAPI	GCANNNNNTGC	2 cut(s)	570, 810
BstC8I	GCNNGC	4 cut(s)	40, 130, 421, 778
BstDEI	CTNAG	5 cut(s)	167, 278, 345, 672, 710
BstF5I	GGATG	5 cut(s)	16, 159, 211, 689, 723
BstKTI	GATC	6 cut(s)	275, 325, 415, 484, 610, 831
BstMBI	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	570, 810
BstNI	CCWGG	2 cut(s)	486, 618
BstSCI	CCNGG	2 cut(s)	484, 616
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	2 cut(s)	548, 816
BstX2I	RGATCY	2 cut(s)	272, 481
BstYI	RGATCY	2 cut(s)	272, 481
Bsu36I	CCTNAGG	1 cut(s)	278
BtsCI	GGATG	5 cut(s)	16, 159, 211, 689, 723
BtsIMutI	CAGTG	2 cut(s)	740, 873
Cac8I	GCNNGC	4 cut(s)	40, 130, 421, 778
CaiI	CAGNNNCTG	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	112, 388, 546
CviAII	CATG	1 cut(s)	759
CviQI	GTAC	3 cut(s)	112, 388, 546
DdeI	CTNAG	5 cut(s)	167, 278, 345, 672, 710
DpnI	GATC	6 cut(s)	274, 324, 414, 483, 609, 830
DpnII	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
Eco81I	CCTNAGG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	484, 616
FaeI	CATG	1 cut(s)	762
FaiI	YATR	9 cut(s)	36, 176, 229, 291, 332, 428, 430, 760, 852
FatI	CATG	1 cut(s)	758
FauI	CCCGC	3 cut(s)	35, 620, 812
FauNDI	CATATG	1 cut(s)	428
Fnu4HI	GCNGC	2 cut(s)	562, 805
FokI	GGATG	5 cut(s)	23, 166, 218, 676, 730
Fsp4HI	GCNGC	2 cut(s)	562, 805
FspBI	CTAG	3 cut(s)	269, 320, 495
GluI	GCNGC	2 cut(s)	562, 805
GsuI	CTGGAG	3 cut(s)	167, 531, 764
HapII	CCGG	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	867
Hin1II	CATG	1 cut(s)	762
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	104, 774
HinfI	GANTC	2 cut(s)	434, 677
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	83, 632
Hpy166II	GTNNAC	4 cut(s)	60, 548, 764, 865
Hpy188I	TCNGA	4 cut(s)	100, 234, 673, 682
Hpy188III	TCNNGA	4 cut(s)	17, 25, 320, 510
Hpy8I	GTNNAC	4 cut(s)	60, 548, 764, 865
HpyAV	CCTTC	3 cut(s)	22, 728, 850
HpyCH4III	ACNGT	1 cut(s)	877
HpyCH4IV	ACGT	2 cut(s)	124, 867
HpyCH4V	TGCA	9 cut(s)	128, 212, 266, 376, 564, 587, 592, 764, 813
HpyF10VI	GCNNNNNNNGC	2 cut(s)	570, 810
HpyF3I	CTNAG	5 cut(s)	167, 278, 345, 672, 710
HpySE526I	ACGT	2 cut(s)	124, 867
Hsp92I	GRCGYC	1 cut(s)	867
Hsp92II	CATG	1 cut(s)	762
Kpn2I	TCCGGA	1 cut(s)	16
Kzo9I	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	2 cut(s)	548, 816
LweI	GCATC	2 cut(s)	221, 253
MaeI	CTAG	3 cut(s)	269, 320, 495
MaeII	ACGT	2 cut(s)	124, 867
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	6 cut(s)	274, 324, 414, 483, 609, 830
MboI	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
MboII	GAAGA	3 cut(s)	272, 588, 743
MfeI	CAATTG	1 cut(s)	793
MflI	RGATCY	2 cut(s)	272, 481
MhlI	GDGCHC	2 cut(s)	742, 766
MluCI	AATT	5 cut(s)	187, 463, 470, 579, 793
MmeI	TCCRAC	2 cut(s)	99, 806
MnlI	CCTC	8 cut(s)	144, 273, 517, 527, 616, 667, 717, 739
MroI	TCCGGA	1 cut(s)	16
MslI	CAYNNNNRTG	1 cut(s)	640
MspA1I	CMGCKG	1 cut(s)	561
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	486, 618
MunI	CAATTG	1 cut(s)	793
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	486, 618
MwoI	GCNNNNNNNGC	2 cut(s)	570, 810
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
NlaIII	CATG	1 cut(s)	762
NlaIV	GGNNCC	2 cut(s)	162, 274
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	434, 677
PkrI	GCNGC	2 cut(s)	563, 806
Psp6I	CCWGG	2 cut(s)	484, 616
PspGI	CCWGG	2 cut(s)	484, 616
PspN4I	GGNNCC	2 cut(s)	162, 274
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	272, 481
RsaI	GTAC	3 cut(s)	113, 389, 547
RsaNI	GTAC	3 cut(s)	112, 388, 546
RseI	CAYNNNNRTG	1 cut(s)	640
SatI	GCNGC	2 cut(s)	562, 805
Sau3AI	GATC	6 cut(s)	272, 322, 412, 481, 607, 828
ScrFI	CCNGG	2 cut(s)	486, 618
SduI	GDGCHC	2 cut(s)	742, 766
SfaNI	GCATC	2 cut(s)	221, 253
SmiMI	CAYNNNNRTG	1 cut(s)	640
Sse9I	AATT	5 cut(s)	187, 463, 470, 579, 793
SsiI	CCGC	5 cut(s)	42, 164, 559, 627, 819
SspMI	CTAG	3 cut(s)	269, 320, 495
StyD4I	CCNGG	2 cut(s)	484, 616
TaaI	ACNGT	1 cut(s)	877
TaiI	ACGT	2 cut(s)	127, 870
TaqI	TCGA	1 cut(s)	80
TasI	AATT	5 cut(s)	187, 463, 470, 579, 793
TfiI	GAWTC	2 cut(s)	434, 677
TscAI	CASTG	2 cut(s)	747, 880
TseI	GCWGC	2 cut(s)	561, 804
TspDTI	ATGAA	3 cut(s)	408, 678, 839
TspRI	CASTG	2 cut(s)	747, 880
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	2 cut(s)	187, 470
XbaI	TCTAGA	1 cut(s)	319
XspI	CTAG	3 cut(s)	269, 320, 495
ZraI	GACGTC	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.