Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

28907952 .. 28912752

Gene Structure 4801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG154800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCCGCACCTCGTTCGCGAGAATCTCTTCATCGGCAACATCACCGACGCAGTCGACGTACTCCAGAACGGCAGCGCCACCGTCACTCATATTCTCTCCGTCCTCAGCTCCGCCTCGATTTCCTTCTTCTCCGAATACAAGAAGGGTCTCACCATCCCCACCAAGGAGATAACCAAGGTCTACGCCGGCGGCGGCGCCGCCTCCGCCTCCGAGGATGATGGCTCCGGGGGCAAGCTGCTGTACTTGTTGGAATATGCGGGGAAGGATTTGAAGCTGGTGAGAATGGGGGTTCCTGTTAGGGATATGGAGAGTGAGAATTTGCTGGATTATTTGGAGGTGTGTTTGGATTTTATTGATAAGAGTAGAAAAGAGGGGTCTGTTTTGGTGCATTGCTTTGCTGGTGTGTCTAGAAGTGCAGCTATCATTACAGCATATCTTATGAGAACAGAACAGTTATCGCAAGAAGATGCACTAGGATCCCTGCGACAGAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAAATCAGCTAAAAATGTACGAAGATATGGGCTTCAAGGTTGATCATGCCAGCCCCATATATAAGTCTTTTCGCCTCAAAATATTGGGTACGCAACTTTTTTTCTGTTTCGCCTATTTTCCGGTTGGTCTGCCTCAATCAAGGATATTGATCTACATGTTATGCCTTCATGTCTACATAATTTTAGTTTTCCAGCATTGTGCGAGCGAAATGTTCCATGGACACATAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

251

Amino Acids

27.93

Weight (kDa)

5.76

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	91 - 183	3e-25	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	91 - 150	4.8e-07	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	3 cut(s)	54, 180, 696
AccII	CGCG	1 cut(s)	18
AciI	CCGC	7 cut(s)	5, 111, 189, 192, 198, 204, 257
AclWI	GGATC	2 cut(s)	471, 484
AcsI	RAATTY	1 cut(s)	316
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	4 cut(s)	60, 242, 542, 613
AfiI	CCNNNNNNNGG	2 cut(s)	163, 515
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	2 cut(s)	271, 559
AluBI	AGCT	6 cut(s)	108, 235, 274, 419, 492, 532
AluI	AGCT	6 cut(s)	108, 235, 274, 419, 492, 532
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	471, 484
ApeKI	GCWGC	3 cut(s)	72, 235, 416
ApoI	RAATTY	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	77, 197
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	34, 142, 289
BamHI	GGATCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	84, 222, 428
BccI	CCATC	3 cut(s)	161, 212, 509
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	408, 473
BfoI	RGCGCY	2 cut(s)	78, 198
BisI	GCNGC	7 cut(s)	5, 73, 190, 193, 198, 236, 417
BlsI	GCNGC	7 cut(s)	6, 74, 191, 194, 199, 237, 418
Bme1390I	CCNGG	1 cut(s)	226
BmiI	GGNNCC	4 cut(s)	196, 223, 291, 478
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	457
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	5 cut(s)	162, 174, 210, 225, 739
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 515
Bse118I	RCCGGY	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	671
BseDI	CCNNGG	5 cut(s)	162, 174, 210, 225, 739
BseGI	GGATG	2 cut(s)	153, 220
BseJI	GATNNNNATC	1 cut(s)	671
BseLI	CCNNNNNNNGG	2 cut(s)	163, 515
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	84, 222, 428
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	186, 225, 644
BslI	CCNNNNNNNGG	2 cut(s)	163, 515
BsmAI	GTCTC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	476, 565, 672
Bsp19I	CCATGG	1 cut(s)	739
Bsp68I	TCGCGA	1 cut(s)	18
BspACI	CCGC	7 cut(s)	5, 111, 189, 192, 198, 204, 257
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	4 cut(s)	196, 223, 291, 478
BspPI	GGATC	2 cut(s)	471, 484
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	5 cut(s)	162, 174, 210, 225, 739
BssMI	GATC	3 cut(s)	476, 565, 672
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	3 cut(s)	162, 174, 739
Bst4CI	ACNGT	2 cut(s)	82, 453
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	4 cut(s)	187, 233, 574, 727
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	739
BstF5I	GGATG	2 cut(s)	153, 220
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	2 cut(s)	78, 198
BstHHI	GCGC	2 cut(s)	77, 197
BstKTI	GATC	3 cut(s)	479, 568, 675
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	476, 565, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 228
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	224
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	84, 222, 428
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	739
BtsCI	GGATG	2 cut(s)	153, 220
BtuMI	TCGCGA	1 cut(s)	18
Cac8I	GCNNGC	4 cut(s)	187, 233, 574, 727
CfoI	GCGC	2 cut(s)	77, 197
Cfr10I	RCCGGY	1 cut(s)	185
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	4 cut(s)	59, 241, 541, 612
CviAII	CATG	4 cut(s)	569, 679, 692, 740
CviJI	RGCY	9 cut(s)	108, 222, 235, 274, 419, 492, 532, 555, 576
CviKI_1	RGCY	9 cut(s)	108, 222, 235, 274, 419, 492, 532, 555, 576
CviQI	GTAC	4 cut(s)	59, 241, 541, 612
DdeI	CTNAG	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	3 cut(s)	478, 567, 674
DpnII	GATC	3 cut(s)	476, 565, 672
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	100, 193
Eco130I	CCWWGG	3 cut(s)	162, 174, 739
Eco31I	GGTCTC	1 cut(s)	152
EcoT14I	CCWWGG	3 cut(s)	162, 174, 739
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	3 cut(s)	162, 174, 739
FaeI	CATG	4 cut(s)	572, 682, 695, 743
FatI	CATG	4 cut(s)	568, 678, 691, 739
FauI	CCCGC	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	3 cut(s)	54, 180, 696
Fnu4HI	GCNGC	7 cut(s)	5, 73, 190, 193, 198, 236, 417
FokI	GGATG	2 cut(s)	140, 227
Fsp4HI	GCNGC	7 cut(s)	5, 73, 190, 193, 198, 236, 417
FspBI	CTAG	2 cut(s)	408, 473
GlaI	GCGC	2 cut(s)	76, 196
GluI	GCNGC	7 cut(s)	5, 73, 190, 193, 198, 236, 417
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	2 cut(s)	78, 198
HapII	CCGG	3 cut(s)	186, 225, 644
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	77, 197
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	572, 682, 695, 743
Hin6I	GCGC	2 cut(s)	75, 195
HinP1I	GCGC	2 cut(s)	75, 195
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	3 cut(s)	186, 225, 644
HphI	GGTGA	3 cut(s)	34, 142, 289
Hpy166II	GTNNAC	3 cut(s)	55, 181, 697
Hpy188I	TCNGA	2 cut(s)	133, 211
Hpy188III	TCNNGA	3 cut(s)	17, 64, 408
Hpy8I	GTNNAC	3 cut(s)	55, 181, 697
Hpy99I	CGWCG	2 cut(s)	50, 59
HpyAV	CCTTC	4 cut(s)	133, 136, 256, 698
HpyCH4III	ACNGT	2 cut(s)	82, 453
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	388, 416, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 228
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	572, 682, 695, 743
HspAI	GCGC	2 cut(s)	75, 195
KasI	GGCGCC	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	3 cut(s)	476, 565, 672
LmnI	GCTCC	2 cut(s)	113, 227
Lsp1109I	GCAGC	3 cut(s)	84, 222, 428
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	408, 473
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	478, 567, 674
MboI	GATC	3 cut(s)	476, 565, 672
MboII	GAAGA	4 cut(s)	19, 118, 476, 557
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	2 cut(s)	316, 702
Mly113I	GGCGCC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	228
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	3 cut(s)	186, 225, 644
MspR9I	CCNGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	203, 228
NaeI	GCCGGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	739
NdeII	GATC	3 cut(s)	476, 565, 672
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	4 cut(s)	572, 682, 695, 743
NlaIV	GGNNCC	4 cut(s)	196, 223, 291, 478
NmuCI	GTSAC	1 cut(s)	82
NruI	TCGCGA	1 cut(s)	18
NspI	RCATGY	1 cut(s)	682
PciI	ACATGT	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	22
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	7 cut(s)	6, 74, 191, 194, 199, 237, 418
PluTI	GGCGCC	1 cut(s)	198
PscI	ACATGT	1 cut(s)	678
PspN4I	GGNNCC	4 cut(s)	196, 223, 291, 478
PsuI	RGATCY	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	18
RsaI	GTAC	4 cut(s)	60, 242, 542, 613
RsaNI	GTAC	4 cut(s)	59, 241, 541, 612
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	7 cut(s)	5, 73, 190, 193, 198, 236, 417
Sau3AI	GATC	3 cut(s)	476, 565, 672
ScrFI	CCNGG	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	457
SfoI	GGCGCC	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	316, 702
SsiI	CCGC	7 cut(s)	5, 111, 189, 192, 198, 204, 257
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	2 cut(s)	408, 473
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	3 cut(s)	162, 174, 739
TaaI	ACNGT	2 cut(s)	82, 453
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	54, 116
TasI	AATT	2 cut(s)	316, 702
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	4 cut(s)	7, 192, 195, 200
TfiI	GAWTC	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	72, 235, 416
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	19, 680
TspGWI	ACGGA	1 cut(s)	88
Tth111I	GACNNNGTC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	316
XbaI	TCTAGA	1 cut(s)	407
XceI	RCATGY	1 cut(s)	682
XmiI	GTMKAC	3 cut(s)	54, 180, 696
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	408, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.