Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

8240241 .. 8240594

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCGTACCGTGTTCGTGAAAATCTGTTCATCGGCAACATCAGTGATGCAGCAGAGATTCTCCAAAATGGTAGCACAGAGATCACGCATATTCTATCGCTTCTTAGTTCAGCGTCGATATCGTTTTTCTTCGAATGGAAGGGTTTAACAATTCCCACAAAGGAAATTAAGAAGGTGTATGCTGGCGCGTCTGGTGGTGCCTCGGCTTCCGAGGATGATTCCGGTGACGGGAAAAAAAGTTGTTCAGCGTCCGATAAGCTTCTGTACTTGTTGGAATATGCAGGCAAGGATTTGAAGCTGGTGAGAATGGGGGTTCCACTGAGAGATATGGAGAATGATTCCAAAGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

118

Amino Acids

12.75

Weight (kDa)

5.14

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	1 cut(s)	188
AfaI	GTAC	2 cut(s)	8, 266
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	2 cut(s)	259, 298
AluI	AGCT	2 cut(s)	259, 298
ApeKI	GCWGC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	236, 313
AsuII	TTCGAA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	199, 315
BmsI	GCATC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	201, 210
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	201, 210
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	199, 315
BspT104I	TTCGAA	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	201, 210
BssMI	GATC	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	184, 283
BstDEI	CTNAG	2 cut(s)	104, 320
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	49, 317
Cac8I	GCNNGC	2 cut(s)	184, 283
CfoI	GCGC	1 cut(s)	188
CseI	GACGC	3 cut(s)	102, 177, 237
Csp6I	GTAC	2 cut(s)	7, 265
CviJI	RGCY	3 cut(s)	206, 259, 298
CviKI_1	RGCY	3 cut(s)	206, 259, 298
CviQI	GTAC	2 cut(s)	7, 265
DdeI	CTNAG	2 cut(s)	104, 320
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	120
FaiI	YATR	4 cut(s)	90, 180, 279, 329
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	51
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	3 cut(s)	102, 177, 237
HhaI	GCGC	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	3 cut(s)	58, 218, 338
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	236, 313
Hpy188I	TCNGA	2 cut(s)	211, 253
Hpy188III	TCNNGA	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	133, 166
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	50, 281
HpyF3I	CTNAG	2 cut(s)	104, 320
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	5 cut(s)	168, 177, 235, 267, 284
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	121
MluCI	AATT	2 cut(s)	150, 165
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	205, 211
MseI	TTAA	2 cut(s)	146, 168
MspI	CCGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	188
NdeII	GATC	1 cut(s)	81
NlaIV	GGNNCC	2 cut(s)	199, 315
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	58, 218, 338
PkrI	GCNGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	199, 315
RsaI	GTAC	2 cut(s)	8, 266
RsaNI	GTAC	2 cut(s)	7, 265
SaqAI	TTAA	2 cut(s)	146, 168
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	81
SetI	ASST	3 cut(s)	177, 261, 300
SfaNI	GCATC	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	132
Sse9I	AATT	2 cut(s)	150, 165
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	116, 132
TasI	AATT	2 cut(s)	150, 165
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	58, 218, 338
Tru1I	TTAA	2 cut(s)	146, 168
Tru9I	TTAA	2 cut(s)	146, 168
TscAI	CASTG	2 cut(s)	49, 324
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	49, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.