Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

84710417 .. 84712447

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATCCAAAATTATACGGGTCGGTTTTTGTGTGTGAGAGAGATAATAAAGCCTCTCTAAGAAAGTTGAACAGCACCACCCGGAGCGAGCAAGCTTTATTTTTTTATCGGTCAAAACAGTTCACCGGCGATCATGCCGCACCTAAGTCGCGAGAATCTCTTCATCGACAACATCACCGACGCGGTCGACGTACTCCCGAACGGCGGCGCCACCGTCACTCATATTCTCTCCGTTCTCGGCTCCGGCTCGATTTCTTCTTCTCCGAATACAAGAAGGGTCTCACCATCCCCACCAAGGAGATAACCAAGGTCTACGCCGGCGGCGCCGCCACCTCCGCCTCCGAGGATGGCTCGGCGATAAGTTGCTTTACTTGTTGGAATATGCCGGGAAGGATTAGAAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

135

Amino Acids

15.76

Weight (kDa)

10.62

Isoelectric Point (pI)

72.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	207, 323
AccI	GTMKAC	2 cut(s)	187, 312
AccII	CGCG	2 cut(s)	151, 183
AciI	CCGC	6 cut(s)	138, 183, 205, 321, 327, 336
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	2 cut(s)	208, 324
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	204, 295
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	2 cut(s)	95, 402
AluI	AGCT	2 cut(s)	95, 402
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	210, 326
AsuC2I	CCSGG	2 cut(s)	82, 387
AsuHPI	GGTGA	3 cut(s)	115, 167, 274
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	207, 323
BccI	CCATC	2 cut(s)	293, 341
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BcnI	CCSGG	2 cut(s)	82, 387
BcoDI	GTCTC	1 cut(s)	284
BfoI	RGCGCY	2 cut(s)	211, 327
BisI	GCNGC	4 cut(s)	138, 206, 322, 327
BlsI	GCNGC	4 cut(s)	139, 207, 323, 328
Bme1390I	CCNGG	2 cut(s)	82, 387
BmiI	GGNNCC	4 cut(s)	6, 209, 242, 325
BmrFI	CCNGG	2 cut(s)	82, 387
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpuMI	CCSGG	2 cut(s)	82, 387
BsaHI	GRCGYC	2 cut(s)	208, 324
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	294, 306, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 295
Bse118I	RCCGGY	2 cut(s)	125, 317
BseDI	CCNNGG	3 cut(s)	294, 306, 342
BseGI	GGATG	2 cut(s)	285, 352
BseLI	CCNNNNNNNGG	2 cut(s)	204, 295
Bsh1236I	CGCG	2 cut(s)	151, 183
Bsh1285I	CGRYCG	1 cut(s)	187
BshNI	GGYRCC	2 cut(s)	207, 323
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	5 cut(s)	82, 126, 244, 318, 386
BslI	CCNNNNNNNGG	2 cut(s)	204, 295
BsmAI	GTCTC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	4, 130
Bsp68I	TCGCGA	1 cut(s)	151
BspACI	CCGC	6 cut(s)	138, 183, 205, 321, 327, 336
BspFNI	CGCG	2 cut(s)	151, 183
BspLI	GGNNCC	4 cut(s)	6, 209, 242, 325
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	207, 323
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	2 cut(s)	125, 317
BssAI	RCCGGY	2 cut(s)	125, 317
BssECI	CCNNGG	3 cut(s)	294, 306, 342
BssMI	GATC	2 cut(s)	4, 130
BssNI	GRCGYC	2 cut(s)	208, 324
BssT1I	CCWWGG	2 cut(s)	294, 306
Bst4CI	ACNGT	2 cut(s)	120, 215
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	2 cut(s)	208, 324
BstC8I	GCNNGC	3 cut(s)	89, 93, 319
BstDEI	CTNAG	2 cut(s)	59, 144
BstF5I	GGATG	2 cut(s)	285, 352
BstFNI	CGCG	2 cut(s)	151, 183
BstH2I	RGCGCY	2 cut(s)	211, 327
BstHHI	GCGC	2 cut(s)	210, 326
BstKTI	GATC	2 cut(s)	7, 133
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	4, 130
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 335
BstSCI	CCNGG	2 cut(s)	80, 385
BstUI	CGCG	2 cut(s)	151, 183
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	285, 352
BtuMI	TCGCGA	1 cut(s)	151
Cac8I	GCNNGC	3 cut(s)	89, 93, 319
CfoI	GCGC	2 cut(s)	210, 326
Cfr10I	RCCGGY	2 cut(s)	125, 317
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	6 cut(s)	53, 95, 241, 247, 351, 402
CviKI_1	RGCY	6 cut(s)	53, 95, 241, 247, 351, 402
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	59, 144
DinI	GGCGCC	2 cut(s)	209, 325
DpnI	GATC	2 cut(s)	6, 132
DpnII	GATC	2 cut(s)	4, 130
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	294, 306
Eco31I	GGTCTC	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	294, 306
EgeI	GGCGCC	2 cut(s)	209, 325
EheI	GGCGCC	2 cut(s)	209, 325
ErhI	CCWWGG	2 cut(s)	294, 306
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	16, 135, 223, 383
FatI	CATG	1 cut(s)	133
FblI	GTMKAC	2 cut(s)	187, 312
Fnu4HI	GCNGC	4 cut(s)	138, 206, 322, 327
FokI	GGATG	2 cut(s)	272, 359
Fsp4HI	GCNGC	4 cut(s)	138, 206, 322, 327
GlaI	GCGC	2 cut(s)	209, 325
GluI	GCNGC	4 cut(s)	138, 206, 322, 327
HaeII	RGCGCY	2 cut(s)	211, 327
HapII	CCGG	5 cut(s)	82, 126, 244, 318, 386
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	210, 326
Hin1I	GRCGYC	2 cut(s)	208, 324
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	2 cut(s)	208, 324
HinP1I	GCGC	2 cut(s)	208, 324
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	5 cut(s)	82, 126, 244, 318, 386
HphI	GGTGA	3 cut(s)	115, 167, 274
Hpy166II	GTNNAC	3 cut(s)	123, 188, 313
Hpy188I	TCNGA	2 cut(s)	265, 343
Hpy188III	TCNNGA	2 cut(s)	150, 197
Hpy8I	GTNNAC	3 cut(s)	123, 188, 313
Hpy99I	CGWCG	2 cut(s)	183, 192
HpyAV	CCTTC	2 cut(s)	268, 384
HpyCH4III	ACNGT	2 cut(s)	120, 215
HpyCH4IV	ACGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 335
HpyF3I	CTNAG	2 cut(s)	59, 144
HpySE526I	ACGT	1 cut(s)	190
Hsp92I	GRCGYC	2 cut(s)	208, 324
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	2 cut(s)	208, 324
KasI	GGCGCC	2 cut(s)	207, 323
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	4, 130
LmnI	GCTCC	2 cut(s)	84, 246
LpnPI	CCDG	6 cut(s)	95, 139, 257, 331, 388, 399
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	6, 132
MboI	GATC	2 cut(s)	4, 130
MboII	GAAGA	3 cut(s)	152, 247, 250
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	11
Mly113I	GGCGCC	2 cut(s)	208, 324
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	4 cut(s)	64, 337, 343, 349
MreI	CGCCGGCG	1 cut(s)	317
MroNI	GCCGGC	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	159
MspI	CCGG	5 cut(s)	82, 126, 244, 318, 386
MspR9I	CCNGG	2 cut(s)	82, 387
MvnI	CGCG	2 cut(s)	151, 183
MwoI	GCNNNNNNNGC	2 cut(s)	323, 335
NaeI	GCCGGC	1 cut(s)	319
NarI	GGCGCC	2 cut(s)	208, 324
NciI	CCSGG	2 cut(s)	82, 387
NdeII	GATC	2 cut(s)	4, 130
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	4 cut(s)	6, 209, 242, 325
NmeAIII	GCCGAG	2 cut(s)	217, 332
NmuCI	GTSAC	1 cut(s)	215
NruI	TCGCGA	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	139, 207, 323, 328
PluTI	GGCGCC	2 cut(s)	211, 327
PspN4I	GGNNCC	4 cut(s)	6, 209, 242, 325
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	183
RruI	TCGCGA	1 cut(s)	151
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	186
SatI	GCNGC	4 cut(s)	138, 206, 322, 327
Sau3AI	GATC	2 cut(s)	4, 130
ScrFI	CCNGG	2 cut(s)	82, 387
SetI	ASST	6 cut(s)	97, 145, 193, 312, 335, 404
SfoI	GGCGCC	2 cut(s)	209, 325
SgrAI	CRCCGGYG	2 cut(s)	125, 317
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	6 cut(s)	138, 183, 205, 321, 327, 336
SspDI	GGCGCC	2 cut(s)	207, 323
StyD4I	CCNGG	2 cut(s)	80, 385
StyI	CCWWGG	2 cut(s)	294, 306
TaaI	ACNGT	2 cut(s)	120, 215
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	3 cut(s)	166, 187, 249
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	1 cut(s)	11
TauI	GCSGC	4 cut(s)	140, 208, 324, 329
TfiI	GAWTC	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	221
Tth111I	GACNNNGTC	1 cut(s)	183
XmiI	GTMKAC	2 cut(s)	187, 312
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.