Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

14174301 .. 14175902

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1116400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCCGTACCGGGTGCGTGAAAATCTATTCATTGGCAACATCAGTGATGCAGCAGAGATTCTCCAAAATGGTAGCACAGAGATCACGCATATTCTATCGGTTCGTAGTTCAGCGTCAATATCAGTTTTCTCCGAATGGAAGGGTCTAACAATTCCCACAAAGGAAATCAAGAAGGTCTATGCTGGCGGGTCTGGTGGTGCCTCAGCTTCTGAGGATGATTCCGGTGACAGGAAAAAGGGTTGTTTGGTGTCCGATAAGCTTCTGTACTTGTTGGAACATGCTGGCAAGGATTTGAAGCTGGTGAGGATGGGGGTTCCACTGAGAGATACGGAGAATGAAGATTTGTTGGATTATTTGGACGTTTGTTTTGATTTTATCGATAGGAGTAGAAAAGAGGGGTCTGTTTTGGTCCATTGCTTTGCTGGTGTGTCTAGAAGGTGCCTCAAAATGTACGAGGAAATGGGCTTCAAGGTTGATTGTGCCAGCCCCATATACAGGTCTTTTCGACTGAAAGTATTGGGTACACTATTTTCTTTTTCTTTACGTTGCCTTCTCTTAATGGTCTATCCCATAAATAGGGCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

196

Amino Acids

21.87

Weight (kDa)

8.17

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	99 - 145	2.4e-08	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 438
AciI	CCGC	1 cut(s)	186
AfaI	GTAC	4 cut(s)	8, 266, 452, 523
AfiI	CCNNNNNNNGG	3 cut(s)	228, 495, 576
AgsI	TTSAA	2 cut(s)	295, 469
AluBI	AGCT	3 cut(s)	206, 259, 298
AluI	AGCT	3 cut(s)	206, 259, 298
AlwNI	CAGNNNCTG	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	236, 313
AvaII	GGWCC	1 cut(s)	409
BanI	GGYRCC	2 cut(s)	197, 438
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	199, 315, 440
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 495, 576
Bse3DI	GCAATG	1 cut(s)	412
BseCI	ATCGAT	1 cut(s)	378
BseGI	GGATG	2 cut(s)	220, 312
BseLI	CCNNNNNNNGG	3 cut(s)	228, 495, 576
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	201, 216, 311
BseXI	GCAGC	1 cut(s)	62
BshNI	GGYRCC	2 cut(s)	197, 438
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	10, 222
BslI	CCNNNNNNNGG	3 cut(s)	228, 495, 576
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	186
BspCNI	CTCAG	3 cut(s)	202, 215, 312
BspDI	ATCGAT	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	199, 315, 440
BspT107I	GGYRCC	2 cut(s)	197, 438
BsrDI	GCAATG	1 cut(s)	412
BssMI	GATC	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	184, 283, 484
BstDEI	CTNAG	3 cut(s)	202, 210, 320
BstF5I	GGATG	2 cut(s)	220, 312
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	220, 312
BtsIMutI	CAGTG	2 cut(s)	49, 317
Cac8I	GCNNGC	3 cut(s)	184, 283, 484
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	4 cut(s)	7, 265, 451, 522
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	6 cut(s)	206, 259, 298, 465, 486, 581
CviKI_1	RGCY	6 cut(s)	206, 259, 298, 465, 486, 581
CviQI	GTAC	4 cut(s)	7, 265, 451, 522
DdeI	CTNAG	3 cut(s)	202, 210, 320
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	409
FaeI	CATG	1 cut(s)	281
FaiI	YATR	6 cut(s)	90, 180, 279, 491, 493, 572
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	227, 319
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	2 cut(s)	10, 222
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	2 cut(s)	58, 218
HpaII	CCGG	2 cut(s)	10, 222
HphI	GGTGA	2 cut(s)	236, 313
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	133, 211, 253
Hpy188III	TCNNGA	2 cut(s)	169, 432
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	4 cut(s)	133, 166, 429, 560
HpyCH4IV	ACGT	2 cut(s)	360, 544
HpyCH4V	TGCA	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	202, 210, 320
HpySE526I	ACGT	2 cut(s)	360, 544
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	2 cut(s)	360, 544
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	350
MluCI	AATT	1 cut(s)	150
MmeI	TCCRAC	2 cut(s)	252, 327
MnlI	CCTC	6 cut(s)	205, 211, 297, 388, 448, 452
MseI	TTAA	1 cut(s)	557
MspI	CCGG	2 cut(s)	10, 222
MspR9I	CCNGG	1 cut(s)	11
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	3 cut(s)	199, 315, 440
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	58, 218
PkrI	GCNGC	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	199, 315, 440
PspPI	GGNCC	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	4 cut(s)	8, 266, 452, 523
RsaNI	GTAC	4 cut(s)	7, 265, 451, 522
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	409
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	9 cut(s)	177, 208, 261, 300, 363, 440, 474, 500, 547
SfaNI	GCATC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	9
TaiI	ACGT	2 cut(s)	363, 547
TaqI	TCGA	2 cut(s)	378, 505
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	58, 218
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	2 cut(s)	49, 324
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	19, 351
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	49, 324
VpaK11BI	GGWCC	1 cut(s)	409
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.