Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

9747350 .. 9750626

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08530.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCCGTACCGGGTTCGTGAAAATCTATACATTGGCAACATCAGTGATGCAGCAGAGATTCTCCAAAATGGCAGCACAGAGATCACGCATATTCTATCGGTTCTTAGTTCAGCGTCAATATCATTTTTCTCTGAATGGAAGGGTCTAACAATTCCCACAAAGGAAATCAAGAAGGTCTATGCTGGCGGGTCTGGTGGTGCCTCAGCTTCTGAGGATGATTCCGGTGACAGGAAAAAGGGTTGTTTGGTGTCCGATAAGCTTCTGTACTTGTTGGAATATGCAGGCAAGGATTTGAAGCTGGTGAGGATGGGGGTTCCACTGAAAGATACGGAGAATGAAGATTTGTTGGATTATTTGGACGTGTGTTTTGATTTTATCGATAGGAGTAGAAAAGAGGGGTCTGTTTTGGTCCATTGCTTTGCTGGTGTGTCTAGAAGTGCAGCTATCATTACAGCATATCTGATGAGAACAGAAAATCTATCACAAGAAGATGCACTAAAATCCCTGAGACAAAGCTGTGAGTTTGTTTGCCCCAATGACGGTTTTCTTGATCAGCTCAAAATGTACGAGGAAATGGGCTTCAAGGTTGATTGTGCCAGCCCCATATACAGGTCTTTTCGCCTGAAAGTATTGGGTGAATCTTATCATCGTGGGGATAGAATAGACAGTTCTAAATTTGGAGCAGATCCTGGGGTGGCTGGTGAAGTTGCCTCTGGAATGGAAGCAGCTTCGAATGAAGGAAAAACTGTTACACCAGCTTTCCGCTGCAAGAAATGCCGAAGAGTTGTTGCATTGCGGGACAATGTTGTGGATCACATTCCAGGTGAGGGAGAGCAATCCTTCGGCTGGCGCAAGCGAAAAAGTAGCAACTCATACAACAAGTATGAGGATTCTGATTCTGAATGTTCATCCATTTTTGTTGAGCCTCTAAAGTGGATGACGGCTGTCGAAGAGGGTGCAATGGAGGGAAAGTTGTCCTGTGTGCATTGCGAAGCTCGTTTGGGTTACTTCAATTGGGCAGGCACCCAATGCAGTTGCGGAAGCTGGATCACCCCTGCCTTCCAGCTCCACAAAAGCCGAGTTGACGTCAGCACCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

367

Amino Acids

40.56

Weight (kDa)

5.69

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1089
AccB1I	GGYRCC	2 cut(s)	197, 1022
AciI	CCGC	4 cut(s)	186, 763, 796, 1038
AclWI	GGATC	3 cut(s)	680, 819, 1055
AcsI	RAATTY	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	1086
AfaI	GTAC	3 cut(s)	8, 266, 566
AfiI	CCNNNNNNNGG	5 cut(s)	228, 539, 609, 827, 846
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	295, 583, 1012
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	688, 820
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	3 cut(s)	680, 819, 1055
AlwNI	CAGNNNCTG	2 cut(s)	209, 689
ApeKI	GCWGC	5 cut(s)	50, 72, 440, 725, 765
ApoI	RAATTY	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	6 cut(s)	236, 313, 647, 713, 836, 1042
AsuII	TTCGAA	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	409
BanI	GGYRCC	2 cut(s)	197, 1022
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	5 cut(s)	62, 84, 452, 737, 752
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	957
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciT130I	CCWGG	2 cut(s)	690, 822
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	432
BisI	GCNGC	5 cut(s)	51, 73, 441, 726, 766
BlsI	GCNGC	5 cut(s)	52, 74, 442, 727, 767
Bme1390I	CCNGG	3 cut(s)	11, 690, 822
Bme18I	GGWCC	1 cut(s)	409
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	199, 315, 1024
BmrFI	CCNGG	3 cut(s)	11, 690, 822
BmsI	GCATC	2 cut(s)	37, 481
BoxI	GACNNNNGTC	1 cut(s)	944
Bpu10I	CCTNAGC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	1086
BsaJI	CCNNGG	1 cut(s)	689
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	956, 986
Bsc4I	CCNNNNNNNGG	5 cut(s)	228, 539, 609, 827, 846
Bse3DI	GCAATG	4 cut(s)	412, 791, 966, 985
BseBI	CCWGG	2 cut(s)	690, 822
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	4 cut(s)	220, 312, 908, 942
BseLI	CCNNNNNNNGG	5 cut(s)	228, 539, 609, 827, 846
BseMI	GCAATG	4 cut(s)	412, 791, 966, 985
BseMII	CTCAG	3 cut(s)	201, 216, 497
BseXI	GCAGC	5 cut(s)	62, 84, 452, 737, 752
BsgI	GTGCAG	1 cut(s)	459
BshNI	GGYRCC	2 cut(s)	197, 1022
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	10, 222
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	5 cut(s)	228, 539, 609, 827, 846
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	812
Bsp119I	TTCGAA	1 cut(s)	731
Bsp143I	GATC	5 cut(s)	81, 550, 685, 811, 1047
BspACI	CCGC	4 cut(s)	186, 763, 796, 1038
BspCNI	CTCAG	3 cut(s)	202, 215, 498
BspDI	ATCGAT	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	199, 315, 1024
BspPI	GGATC	3 cut(s)	680, 819, 1055
BspT104I	TTCGAA	1 cut(s)	731
BspT107I	GGYRCC	2 cut(s)	197, 1022
BsrDI	GCAATG	4 cut(s)	412, 791, 966, 985
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	5 cut(s)	81, 550, 685, 811, 1047
BssNI	GRCGYC	1 cut(s)	1086
Bst2UI	CCWGG	2 cut(s)	690, 822
Bst4CI	ACNGT	3 cut(s)	542, 668, 748
Bst6I	CTCTTC	2 cut(s)	775, 945
BstACI	GRCGYC	1 cut(s)	1086
BstAPI	GCANNNNNTGC	2 cut(s)	774, 1029
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	6 cut(s)	184, 283, 598, 848, 854, 1021
BstDEI	CTNAG	4 cut(s)	104, 202, 210, 506
BstF5I	GGATG	4 cut(s)	220, 312, 908, 942
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	5 cut(s)	84, 553, 688, 814, 1050
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	5 cut(s)	81, 550, 685, 811, 1047
BstMWI	GCNNNNNNNGC	2 cut(s)	774, 1029
BstNI	CCWGG	2 cut(s)	690, 822
BstPAI	GACNNNNGTC	1 cut(s)	944
BstSCI	CCNGG	3 cut(s)	9, 688, 820
BstV1I	GCAGC	5 cut(s)	62, 84, 452, 737, 752
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
Bsu15I	ATCGAT	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	4 cut(s)	220, 312, 908, 942
BtsIMutI	CAGTG	2 cut(s)	49, 317
Cac8I	GCNNGC	6 cut(s)	184, 283, 598, 848, 854, 1021
CaiI	CAGNNNCTG	2 cut(s)	209, 689
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	7, 265, 565
CviQI	GTAC	3 cut(s)	7, 265, 565
DdeI	CTNAG	4 cut(s)	104, 202, 210, 506
DpnI	GATC	5 cut(s)	83, 552, 687, 813, 1049
DpnII	GATC	5 cut(s)	81, 550, 685, 811, 1047
Eam1104I	CTCTTC	2 cut(s)	775, 945
EarI	CTCTTC	2 cut(s)	775, 945
Eco47I	GGWCC	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	688, 820
FaiI	YATR	9 cut(s)	28, 90, 180, 279, 457, 605, 607, 874, 885
FaqI	GGGAC	1 cut(s)	812
FauI	CCCGC	2 cut(s)	179, 789
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	5 cut(s)	51, 73, 441, 726, 766
FokI	GGATG	4 cut(s)	227, 319, 895, 949
Fsp4HI	GCNGC	5 cut(s)	51, 73, 441, 726, 766
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	5 cut(s)	51, 73, 441, 726, 766
HapII	CCGG	2 cut(s)	10, 222
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	852
Hin1I	GRCGYC	1 cut(s)	1086
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	5 cut(s)	58, 218, 638, 890, 896
HpaII	CCGG	2 cut(s)	10, 222
HphI	GGTGA	6 cut(s)	236, 313, 647, 713, 836, 1042
Hpy166II	GTNNAC	1 cut(s)	1084
Hpy188I	TCNGA	6 cut(s)	133, 211, 253, 462, 895, 901
Hpy188III	TCNNGA	5 cut(s)	17, 169, 432, 548, 714
Hpy8I	GTNNAC	1 cut(s)	1084
HpyAV	CCTTC	5 cut(s)	133, 166, 731, 850, 1069
HpyCH4III	ACNGT	3 cut(s)	542, 668, 748
HpyCH4IV	ACGT	2 cut(s)	360, 1086
HpyCH4V	TGCA	9 cut(s)	50, 281, 440, 494, 768, 791, 959, 985, 1032
HpyF10VI	GCNNNNNNNGC	2 cut(s)	774, 1029
HpyF3I	CTNAG	4 cut(s)	104, 202, 210, 506
HpySE526I	ACGT	2 cut(s)	360, 1086
Hsp92I	GRCGYC	1 cut(s)	1086
HspAI	GCGC	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	81, 550, 685, 811, 1047
LmnI	GCTCC	2 cut(s)	680, 1071
Lsp1109I	GCAGC	5 cut(s)	62, 84, 452, 737, 752
LweI	GCATC	2 cut(s)	37, 481
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	2 cut(s)	360, 1086
MaeIII	GTNAC	3 cut(s)	224, 748, 1004
MalI	GATC	5 cut(s)	83, 552, 687, 813, 1049
MboI	GATC	5 cut(s)	81, 550, 685, 811, 1047
MboII	GAAGA	4 cut(s)	350, 500, 792, 962
MfeI	CAATTG	1 cut(s)	1012
MflI	RGATCY	1 cut(s)	685
MluCI	AATT	3 cut(s)	150, 674, 1012
MmeI	TCCRAC	2 cut(s)	252, 327
MspA1I	CMGCKG	1 cut(s)	765
MspI	CCGG	2 cut(s)	10, 222
MspR9I	CCNGG	3 cut(s)	11, 690, 822
MunI	CAATTG	1 cut(s)	1012
MvaI	CCWGG	2 cut(s)	690, 822
MwoI	GCNNNNNNNGC	2 cut(s)	774, 1029
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	5 cut(s)	81, 550, 685, 811, 1047
NlaIV	GGNNCC	3 cut(s)	199, 315, 1024
NmuCI	GTSAC	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	731
PfeI	GAWTC	5 cut(s)	58, 218, 638, 890, 896
PkrI	GCNGC	5 cut(s)	52, 74, 442, 727, 767
PshAI	GACNNNNGTC	1 cut(s)	944
Psp6I	CCWGG	2 cut(s)	688, 820
PspGI	CCWGG	2 cut(s)	688, 820
PspN4I	GGNNCC	3 cut(s)	199, 315, 1024
PspPI	GGNCC	1 cut(s)	409
PstNI	CAGNNNCTG	2 cut(s)	209, 689
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	3 cut(s)	8, 266, 566
RsaNI	GTAC	3 cut(s)	7, 265, 565
SatI	GCNGC	5 cut(s)	51, 73, 441, 726, 766
Sau3AI	GATC	5 cut(s)	81, 550, 685, 811, 1047
Sau96I	GGNCC	1 cut(s)	409
ScrFI	CCNGG	3 cut(s)	11, 690, 822
SfaNI	GCATC	2 cut(s)	37, 481
SfuI	TTCGAA	1 cut(s)	731
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	3 cut(s)	150, 674, 1012
SsiI	CCGC	4 cut(s)	186, 763, 796, 1038
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	9, 688, 820
TaaI	ACNGT	3 cut(s)	542, 668, 748
TaiI	ACGT	2 cut(s)	363, 1089
TaqI	TCGA	3 cut(s)	378, 731, 948
TasI	AATT	3 cut(s)	150, 674, 1012
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	5 cut(s)	58, 218, 638, 890, 896
TscAI	CASTG	2 cut(s)	49, 324
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	5 cut(s)	50, 72, 440, 725, 765
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	351, 750, 897
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	49, 324
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	674
XbaI	TCTAGA	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XspI	CTAG	1 cut(s)	432
ZraI	GACGTC	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.