Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002772.1

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

18348 .. 22166

Gene Structure 3819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002772.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgccgcacctagttcgcgagaatctcttcatcggcaacatcaccgacgccgtcgacgtactccaaaacggcagcgccaccgtcactcatattctctccgttctcagctccgcctcgatttccttcttctccgaatacaagaagggtctcaccatccccaccaaggagataaccaaggtctacgccggcggcggcgcctccgcctccgaggatggctccgggggtaagctgctgtacttgttggaatatgcggggaaggatttgaagctggtgagaatgggggttcctgttagggatatggagagtgagaatttgctggattatttggaggtgtgtttggattttattgataagagtagaaaagaggggtctgttttggtgcattgctttgctggtgtgtctagaaggcctgcagatgcactaggatctctgcgacagagctgtgaatcttattatcgcggagataaaatagacagccctaaatttggtgctgatcctggtttgcccagtgaagttacctctcaagtggaatcatctccaatcggaggaaaaaatgggacatctgcatttcgctgcaaaaaatgccgaagacttgttgcagtacaggataatgttgtggaccacattccaggtcagggtgagacatcttttgaatggcgcaagtggaaaagtagcaacgataacaactttgaggattctgaatgttcatccatatttgttgagcctctaaaatggatgacagcagtggaagaaggtgcaatggagggcaagttgtcctgtgcacattgtgaagctcgtctgggttacttcaactggtcaggcatccaatgcagttgcgggagctggatcacccccgccttccagctccatagaagccgagtggacatgagcagtgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

299

Amino Acids

32.73

Weight (kDa)

5.76

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	2 cut(s)	54, 180
AccII	CGCG	2 cut(s)	18, 459
AciI	CCGC	9 cut(s)	5, 111, 189, 192, 201, 251, 459, 837, 855
AclWI	GGATC	3 cut(s)	433, 488, 854
AcsI	RAATTY	2 cut(s)	310, 482
AcyI	GRCGYC	2 cut(s)	48, 195
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	3 cut(s)	60, 236, 603
AfiI	CCNNNNNNNGG	4 cut(s)	163, 485, 545, 635
AgsI	TTSAA	3 cut(s)	265, 653, 811
AjnI	CCWGG	2 cut(s)	496, 628
AluBI	AGCT	7 cut(s)	108, 229, 268, 441, 794, 843, 865
AluI	AGCT	7 cut(s)	108, 229, 268, 441, 794, 843, 865
Alw21I	GWGCWC	1 cut(s)	784
Alw26I	GTCTC	2 cut(s)	152, 635
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	433, 488, 854
AoxI	GGCC	1 cut(s)	407
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	3 cut(s)	72, 229, 573
ApoI	RAATTY	2 cut(s)	310, 482
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	77, 197, 660
AspS9I	GGNCC	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	5 cut(s)	34, 142, 283, 650, 841
AvaII	GGWCC	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	784
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	784
BbvI	GCAGC	3 cut(s)	84, 216, 560
BccI	CCATC	2 cut(s)	161, 206
BceAI	ACGGC	2 cut(s)	35, 85
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	498, 630
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	152, 635
BfaI	CTAG	3 cut(s)	11, 402, 422
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	2 cut(s)	78, 198
BisI	GCNGC	6 cut(s)	5, 73, 190, 193, 230, 574
BlsI	GCNGC	6 cut(s)	6, 74, 191, 194, 231, 575
Bme1390I	CCNGG	3 cut(s)	220, 498, 630
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	3 cut(s)	196, 217, 285
BmrFI	CCNGG	3 cut(s)	220, 498, 630
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	406, 831
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	595
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpuEI	CTTGAG	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	2 cut(s)	48, 195
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	162, 174, 207, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 485, 545, 635
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	507, 818
Bse3DI	GCAATG	2 cut(s)	382, 765
BseBI	CCWGG	2 cut(s)	498, 630
BseDI	CCNNGG	4 cut(s)	162, 174, 207, 219
BseGI	GGATG	5 cut(s)	153, 217, 707, 741, 822
BseLI	CCNNNNNNNGG	4 cut(s)	163, 485, 545, 635
BseMI	GCAATG	2 cut(s)	382, 765
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	507, 818
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	3 cut(s)	84, 216, 560
Bsh1236I	CGCG	2 cut(s)	18, 459
BshFI	GGCC	1 cut(s)	409
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	784
BsiSI	CCGG	2 cut(s)	186, 219
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	4 cut(s)	163, 485, 545, 635
BsmAI	GTCTC	2 cut(s)	152, 635
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	409
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	784
Bsp143I	GATC	3 cut(s)	425, 493, 846
Bsp68I	TCGCGA	1 cut(s)	18
BspACI	CCGC	9 cut(s)	5, 111, 189, 192, 201, 251, 459, 837, 855
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	18, 459
BspLI	GGNNCC	3 cut(s)	196, 217, 285
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	3 cut(s)	433, 488, 854
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	382, 765
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	507, 818
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	162, 174, 207, 219
BssMI	GATC	3 cut(s)	425, 493, 846
BssNI	GRCGYC	2 cut(s)	48, 195
BssT1I	CCWWGG	2 cut(s)	162, 174
Bst2UI	CCWGG	2 cut(s)	498, 630
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	2 cut(s)	48, 195
BstAPI	GCANNNNNTGC	2 cut(s)	582, 828
BstC8I	GCNNGC	2 cut(s)	187, 411
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	5 cut(s)	153, 217, 707, 741, 822
BstFNI	CGCG	2 cut(s)	18, 459
BstH2I	RGCGCY	2 cut(s)	78, 198
BstHHI	GCGC	3 cut(s)	77, 197, 660
BstKTI	GATC	3 cut(s)	428, 496, 849
BstMAI	GTCTC	2 cut(s)	152, 635
BstMBI	GATC	3 cut(s)	425, 493, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	582, 828
BstNI	CCWGG	2 cut(s)	498, 630
BstSCI	CCNGG	3 cut(s)	218, 496, 628
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	784
BstUI	CGCG	2 cut(s)	18, 459
BstV1I	GCAGC	3 cut(s)	84, 216, 560
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	409
BtsCI	GGATG	5 cut(s)	153, 217, 707, 741, 822
BtsI	GCAGTG	2 cut(s)	750, 898
BtsIMutI	CAGTG	3 cut(s)	514, 750, 898
BtuMI	TCGCGA	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	187, 411
CfoI	GCGC	3 cut(s)	77, 197, 660
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	619
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	59, 235, 602
CviAII	CATG	1 cut(s)	886
CviQI	GTAC	3 cut(s)	59, 235, 602
DdeI	CTNAG	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	3 cut(s)	427, 495, 848
DpnII	GATC	3 cut(s)	425, 493, 846
DraIII	CACNNNGTG	1 cut(s)	788
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	100, 190
Eco130I	CCWWGG	2 cut(s)	162, 174
Eco147I	AGGCCT	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	496, 628
EcoT14I	CCWWGG	2 cut(s)	162, 174
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	162, 174
FaeI	CATG	1 cut(s)	889
FaiI	YATR	6 cut(s)	90, 249, 299, 713, 870, 887
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	1 cut(s)	885
FauI	CCCGC	3 cut(s)	244, 830, 862
FblI	GTMKAC	2 cut(s)	54, 180
Fnu4HI	GCNGC	6 cut(s)	5, 73, 190, 193, 230, 574
FokI	GGATG	5 cut(s)	140, 224, 694, 748, 809
Fsp4HI	GCNGC	6 cut(s)	5, 73, 190, 193, 230, 574
FspBI	CTAG	3 cut(s)	11, 402, 422
GlaI	GCGC	3 cut(s)	76, 196, 659
GluI	GCNGC	6 cut(s)	5, 73, 190, 193, 230, 574
HaeII	RGCGCY	2 cut(s)	78, 198
HaeIII	GGCC	1 cut(s)	409
HapII	CCGG	2 cut(s)	186, 219
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	3 cut(s)	77, 197, 660
Hin1I	GRCGYC	2 cut(s)	48, 195
Hin1II	CATG	1 cut(s)	889
Hin6I	GCGC	3 cut(s)	75, 195, 658
HinP1I	GCGC	3 cut(s)	75, 195, 658
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	22, 446, 530, 695
HpaII	CCGG	2 cut(s)	186, 219
HphI	GGTGA	5 cut(s)	34, 142, 283, 650, 841
Hpy166II	GTNNAC	5 cut(s)	55, 181, 619, 782, 883
Hpy188I	TCNGA	4 cut(s)	133, 208, 545, 700
Hpy188III	TCNNGA	2 cut(s)	17, 402
Hpy8I	GTNNAC	5 cut(s)	55, 181, 619, 782, 883
Hpy99I	CGWCG	3 cut(s)	50, 56, 59
HpyAV	CCTTC	6 cut(s)	133, 136, 250, 399, 746, 868
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	9 cut(s)	382, 413, 419, 566, 576, 599, 758, 782, 831
HpyF10VI	GCNNNNNNNGC	2 cut(s)	582, 828
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	2 cut(s)	48, 195
Hsp92II	CATG	1 cut(s)	889
HspAI	GCGC	3 cut(s)	75, 195, 658
KasI	GGCGCC	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	425, 493, 846
LmnI	GCTCC	4 cut(s)	113, 221, 840, 870
Lsp1109I	GCAGC	3 cut(s)	84, 216, 560
LweI	GCATC	2 cut(s)	406, 831
MaeI	CTAG	3 cut(s)	11, 402, 422
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	82, 514, 803
MalI	GATC	3 cut(s)	427, 495, 848
MboI	GATC	3 cut(s)	425, 493, 846
MboII	GAAGA	4 cut(s)	19, 118, 600, 761
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	784
MluCI	AATT	2 cut(s)	310, 482
Mly113I	GGCGCC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	222
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	2 cut(s)	186, 219
MspR9I	CCNGG	3 cut(s)	220, 498, 630
MvaI	CCWGG	2 cut(s)	498, 630
MvnI	CGCG	2 cut(s)	18, 459
MwoI	GCNNNNNNNGC	2 cut(s)	582, 828
NaeI	GCCGGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	425, 493, 846
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	889
NlaIV	GGNNCC	3 cut(s)	196, 217, 285
NmuCI	GTSAC	1 cut(s)	82
NruI	TCGCGA	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	22, 446, 530, 695
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	6 cut(s)	6, 74, 191, 194, 231, 575
PluTI	GGCGCC	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	496, 628
PspGI	CCWGG	2 cut(s)	496, 628
PspN4I	GGNNCC	3 cut(s)	196, 217, 285
PspPI	GGNCC	1 cut(s)	619
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	18
RsaI	GTAC	3 cut(s)	60, 236, 603
RsaNI	GTAC	3 cut(s)	59, 235, 602
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	6 cut(s)	5, 73, 190, 193, 230, 574
Sau3AI	GATC	3 cut(s)	425, 493, 846
Sau96I	GGNCC	1 cut(s)	619
ScrFI	CCNGG	3 cut(s)	220, 498, 630
SduI	GDGCHC	1 cut(s)	784
SfaNI	GCATC	2 cut(s)	406, 831
SfcI	CTRYAG	1 cut(s)	411
SfoI	GGCGCC	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	185
SgrDI	CGTCGACG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	619
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
Sse9I	AATT	2 cut(s)	310, 482
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	9 cut(s)	5, 111, 189, 192, 201, 251, 459, 837, 855
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	3 cut(s)	11, 402, 422
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	3 cut(s)	218, 496, 628
StyI	CCWWGG	2 cut(s)	162, 174
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	54, 116
TasI	AATT	2 cut(s)	310, 482
TatI	WGTACW	2 cut(s)	234, 601
TauI	GCSGC	3 cut(s)	7, 192, 195
TfiI	GAWTC	4 cut(s)	22, 446, 530, 695
TscAI	CASTG	3 cut(s)	514, 750, 898
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	72, 229, 573
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	19, 696
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	514, 750, 898
Tth111I	GACNNNGTC	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	2 cut(s)	310, 482
XbaI	TCTAGA	1 cut(s)	401
XmiI	GTMKAC	2 cut(s)	54, 180
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	3 cut(s)	11, 402, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.