Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

4880422 .. 4880658

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1050900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCGGCAGCTCGAAGTCGGTGGAGGAGGGTTCAAAAATATTGTTCGTCGATTTTTGTGGACGAGCCTCCAATGTGGATGAAGACGGCGGTCGGAGAAGGTGCAGTGGAGGGGAAGTTGTACTGCGGACATTGTAAGTCTCCGTTGGGTTGCTTCAATTGGGCAGGCACCCAATGCAGTTACGGTGCGTGGATCACCCCCGCCTTCCAGCTCCATAAAAGCCGGCTCGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

79

Amino Acids

8.79

Weight (kDa)

9.17

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	4 cut(s)	5, 89, 126, 201
AclWI	GGATC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	35, 157
AluBI	AGCT	2 cut(s)	11, 211
AluI	AGCT	2 cut(s)	11, 211
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	144
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
BmiI	GGNNCC	1 cut(s)	169
BoxI	GACNNNNGTC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	1 cut(s)	222
BseGI	GGATG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	4 cut(s)	5, 89, 126, 201
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	222
BssMI	GATC	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	166, 224
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	192
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstPAI	GACNNNNGTC	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	166, 224
Cfr10I	RCCGGY	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	5 cut(s)	11, 67, 211, 222, 226
CviKI_1	RGCY	5 cut(s)	11, 67, 211, 222, 226
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
FaiI	YATR	3 cut(s)	216, 233, 235
FauI	CCCGC	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	233
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	6, 9
GluI	GCNGC	2 cut(s)	6, 9
HapII	CCGG	1 cut(s)	223
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	92, 214
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	104, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	222
KroNI	GCCGGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	2 cut(s)	150, 221
Lsp1109I	GCAGC	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	1 cut(s)	94
MfeI	CAATTG	1 cut(s)	157
MluCI	AATT	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	18, 21, 78, 103
MroNI	GCCGGC	1 cut(s)	222
MspI	CCGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	174
NaeI	GCCGGC	1 cut(s)	224
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	1 cut(s)	192
NgoMIV	GCCGGC	1 cut(s)	222
NlaIV	GGNNCC	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	7, 10
PshAI	GACNNNNGTC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	1 cut(s)	192
SetI	ASST	3 cut(s)	13, 103, 213
SgeI	CNNG	6 cut(s)	24, 76, 177, 201, 212, 220
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	4 cut(s)	5, 89, 126, 201
SspI	AATATT	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	3 cut(s)	13, 50, 228
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.