Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

29371256 .. 29375873

Gene Structure 4618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56543

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTTCTCATGGATGCTGATGGGCATTGCAGCTATCATTACAGCATATCTTATGAGAACAGAACAGTTATCGCAAGAAGATGCACTAGGATCCCTGCGACAGAGCTGTGAGTTTGTTTTCCCCAATGATGGTTTTCTGAATCAGCTAAAAATGTATGAAGATATGGGCTTCAAGATTGATCATGCCAGCCCCATATATAAGTCTTTTCGCCTCAAACTATTGGGTGAATCTTATTATCGGGAGATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

83

Amino Acids

9.73

Weight (kDa)

5.71

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	10 - 54	1.4e-07	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	84, 97
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	3 cut(s)	32, 105, 145
AluI	AGCT	3 cut(s)	32, 105, 145
AlwI	GGATC	2 cut(s)	84, 97
ApeKI	GCWGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	13, 122
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	2 cut(s)	3, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	89, 178
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	84, 97
BsrDI	GCAATG	1 cut(s)	24
BssMI	GATC	2 cut(s)	89, 178
Bst4CI	ACNGT	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	92, 181
BstMBI	GATC	2 cut(s)	89, 178
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	187
CviAII	CATG	2 cut(s)	9, 182
CviJI	RGCY	5 cut(s)	32, 105, 145, 168, 189
CviKI_1	RGCY	5 cut(s)	32, 105, 145, 168, 189
DpnI	GATC	2 cut(s)	91, 180
DpnII	GATC	2 cut(s)	89, 178
FaeI	CATG	2 cut(s)	12, 185
FaiI	YATR	9 cut(s)	10, 46, 53, 156, 164, 183, 194, 196, 198
FatI	CATG	2 cut(s)	8, 181
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	12, 185
HinfI	GANTC	2 cut(s)	139, 227
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	172, 239
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	29, 83
Hsp92II	CATG	2 cut(s)	12, 185
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	89, 178
LpnPI	CCDG	2 cut(s)	107, 199
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	3, 70
MaeI	CTAG	1 cut(s)	86
MalI	GATC	2 cut(s)	91, 180
MboI	GATC	2 cut(s)	89, 178
MboII	GAAGA	2 cut(s)	89, 170
MflI	RGATCY	1 cut(s)	89
MnlI	CCTC	1 cut(s)	221
NdeII	GATC	2 cut(s)	89, 178
NlaIII	CATG	2 cut(s)	12, 185
NlaIV	GGNNCC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	139, 227
PkrI	GCNGC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	89
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	89, 178
SetI	ASST	3 cut(s)	34, 107, 147
SfaNI	GCATC	2 cut(s)	3, 70
SgeI	CNNG	7 cut(s)	21, 86, 98, 106, 184, 194, 198
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	139, 227
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	171
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.