Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

66172787 .. 66174535

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGCAACAAGACCGCCACCTTTCTCCAGCTCCTCTCCCCCTTATTCTTCATCTTCCTCATGCATCTTTTGCTTCCAGAAGGCCTACGATGCTCAGAATCAGTCTTCCACTGCGTACCGGAGCGTCACCTATTCTCAGCCGCTGGTTTCGCTTCCTATCCCGCCCTGCGAGGACAAGCTCTCTATCTAAACGCCGTGCTATGATTTCGTGTGGAGAGAATATCAGAGCCCTAGGATTCGGAGCGCTCTCCGGCTCGATTTCCTTCTTCTCCGAATACAAGAAGGGTCTCACCATCCCCACCAAGGAGATAACCAAGGTCTACGCCGGCGGCAGCGCCACCTCCGCCTCCGAGGATGGCTCCGGCGGTAAGCTGCTTTACTTGTTGGAATATGCGGGGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

135

Amino Acids

14.67

Weight (kDa)

10.56

Isoelectric Point (pI)

69.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	7 cut(s)	16, 142, 163, 330, 345, 366, 395
AfaI	GTAC	1 cut(s)	118
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	32, 180, 373
AluI	AGCT	3 cut(s)	32, 180, 373
Alw26I	GTCTC	1 cut(s)	293
AlwNI	CAGNNNCTG	1 cut(s)	144
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	333, 373
AspA2I	CCTAGG	1 cut(s)	232
AspLEI	GCGC	3 cut(s)	7, 247, 338
AsuHPI	GGTGA	2 cut(s)	120, 283
AvrII	CCTAGG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	345, 360
BccI	CCATC	2 cut(s)	302, 350
BceAI	ACGGC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	233
BfoI	RGCGCY	2 cut(s)	248, 339
BisI	GCNGC	4 cut(s)	142, 331, 334, 374
BlnI	CCTAGG	1 cut(s)	232
BlsI	GCNGC	4 cut(s)	143, 332, 335, 375
BmiI	GGNNCC	1 cut(s)	361
BmsI	GCATC	2 cut(s)	74, 81
BpiI	GAAGAC	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	4 cut(s)	232, 303, 315, 351
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	326
BseDI	CCNNGG	4 cut(s)	232, 303, 315, 351
BseGI	GGATG	2 cut(s)	294, 361
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	109, 151
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	345, 360
BshFI	GGCC	1 cut(s)	85
BsiSI	CCGG	4 cut(s)	120, 252, 327, 363
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	85
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	232
BspACI	CCGC	7 cut(s)	16, 142, 163, 330, 345, 366, 395
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	2 cut(s)	108, 150
BspLI	GGNNCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	232, 303, 315, 351
BssT1I	CCWWGG	3 cut(s)	232, 303, 315
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	95, 137
BstF5I	GGATG	2 cut(s)	294, 361
BstH2I	RGCGCY	2 cut(s)	248, 339
BstHHI	GCGC	3 cut(s)	7, 247, 338
BstMAI	GTCTC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 91, 150, 344
BstV1I	GCAGC	2 cut(s)	345, 360
BstV2I	GAAGAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	294, 361
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	144
CfoI	GCGC	3 cut(s)	7, 247, 338
Cfr10I	RCCGGY	1 cut(s)	326
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	8 cut(s)	32, 85, 141, 180, 230, 255, 360, 373
CviKI_1	RGCY	8 cut(s)	32, 85, 141, 180, 230, 255, 360, 373
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	95, 137
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	3 cut(s)	232, 303, 315
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	293
Eco47III	AGCGCT	1 cut(s)	246
EcoT14I	CCWWGG	3 cut(s)	232, 303, 315
EcoT22I	ATGCAT	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	3 cut(s)	232, 303, 315
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	63, 203, 393
FatI	CATG	1 cut(s)	61
FauI	CCCGC	2 cut(s)	170, 388
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	142, 331, 334, 374
FokI	GGATG	2 cut(s)	281, 368
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	142, 331, 334, 374
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	3 cut(s)	6, 246, 337
GluI	GCNGC	4 cut(s)	142, 331, 334, 374
GsuI	CTGGAG	1 cut(s)	12
HaeII	RGCGCY	2 cut(s)	248, 339
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	4 cut(s)	120, 252, 327, 363
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	3 cut(s)	7, 247, 338
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	3 cut(s)	5, 245, 336
HinP1I	GCGC	3 cut(s)	5, 245, 336
HinfI	GANTC	2 cut(s)	99, 237
HpaII	CCGG	4 cut(s)	120, 252, 327, 363
HphI	GGTGA	2 cut(s)	120, 283
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	5 cut(s)	98, 227, 242, 274, 352
Hpy188III	TCNNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	4 cut(s)	75, 274, 277, 394
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 91, 150, 344
HpyF3I	CTNAG	2 cut(s)	95, 137
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	3 cut(s)	5, 245, 336
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
LmnI	GCTCC	4 cut(s)	37, 122, 242, 365
LpnPI	CCDG	8 cut(s)	42, 91, 130, 133, 180, 265, 340, 376
Lsp1109I	GCAGC	2 cut(s)	345, 360
LweI	GCATC	2 cut(s)	74, 81
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	126
MboII	GAAGA	4 cut(s)	41, 47, 98, 259
MhlI	GDGCHC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	45, 69, 165, 346, 352, 358
Mph1103I	ATGCAT	1 cut(s)	67
MreI	CGCCGGCG	1 cut(s)	326
MroNI	GCCGGC	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	4 cut(s)	120, 252, 327, 363
MwoI	GCNNNNNNNGC	4 cut(s)	71, 91, 150, 344
NaeI	GCCGGC	1 cut(s)	328
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	126
NsiI	ATGCAT	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	99, 237
PkrI	GCNGC	4 cut(s)	143, 332, 335, 375
PspN4I	GGNNCC	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SatI	GCNGC	4 cut(s)	142, 331, 334, 374
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	7 cut(s)	24, 34, 133, 182, 321, 344, 375
SfaNI	GCATC	2 cut(s)	74, 81
SgrAI	CRCCGGYG	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	7 cut(s)	16, 142, 163, 330, 345, 366, 395
SspMI	CTAG	1 cut(s)	233
StuI	AGGCCT	1 cut(s)	85
StyI	CCWWGG	3 cut(s)	232, 303, 315
TaqI	TCGA	1 cut(s)	257
TauI	GCSGC	2 cut(s)	144, 333
TfiI	GAWTC	2 cut(s)	99, 237
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	2 cut(s)	333, 373
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.