Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

30916672 .. 30917381

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56641

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTGCGGTTTTGGAGGAAAAACTGGGACATCTGCATTTCGCTGCAAAAAATGTCGTAGACTTGTTGCAGTACAGGATAATGTTGTGGACCACATTCCAGGTCAGGGTGAGACATCTTTTGAATGGCGCAAGCGGAAAGGTAGCAACTATAACAACTTTGAGGATTTTGAATGTTCATCCATATTTGTTGAGCCTTTAAAATGGATGACAGCAGTGGAAGAAGGTGCAATGGAGGGCAAGTTGTCCTGCGCATCCAATGCAGTTGCGGGAGCTGGATCACCCCTGCCTTCCAGCTCCATAGAAGCCGAGTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

105

Amino Acids

11.42

Weight (kDa)

5.81

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	3 cut(s)	6, 133, 266
AclWI	GGATC	1 cut(s)	283
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	122, 170
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	272, 294
AluI	AGCT	2 cut(s)	272, 294
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	129, 251
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	119, 270
AvaII	GGWCC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	99
BseGI	GGATG	3 cut(s)	176, 210, 251
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	3 cut(s)	6, 133, 266
BspPI	GGATC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	131
BstF5I	GGATG	3 cut(s)	176, 210, 251
BstHHI	GCGC	2 cut(s)	129, 251
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	176, 210, 251
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	2 cut(s)	129, 251
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	4 cut(s)	193, 272, 294, 305
CviKI_1	RGCY	4 cut(s)	193, 272, 294, 305
CviQI	GTAC	1 cut(s)	71
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
DraI	TTTAAA	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	318
FaiI	YATR	4 cut(s)	150, 182, 299, 316
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	3 cut(s)	163, 217, 238
Fsp4HI	GCNGC	1 cut(s)	43
FspI	TGCGCA	1 cut(s)	250
GlaI	GCGC	2 cut(s)	128, 250
GluI	GCNGC	1 cut(s)	43
HhaI	GCGC	2 cut(s)	129, 251
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	2 cut(s)	127, 249
HinP1I	GCGC	2 cut(s)	127, 249
HphI	GGTGA	2 cut(s)	119, 270
Hpy166II	GTNNAC	3 cut(s)	59, 88, 312
Hpy8I	GTNNAC	3 cut(s)	59, 88, 312
HpyAV	CCTTC	2 cut(s)	215, 297
HpyCH4V	TGCA	5 cut(s)	35, 45, 68, 227, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	2 cut(s)	127, 249
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	269, 299
LpnPI	CCDG	9 cut(s)	9, 59, 84, 89, 111, 258, 259, 296, 304
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	260
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	1 cut(s)	230
MnlI	CCTC	3 cut(s)	8, 154, 226
MseI	TTAA	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	318
NsbI	TGCGCA	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	5 cut(s)	103, 142, 226, 274, 296
SfaNI	GCATC	1 cut(s)	260
SinI	GGWCC	1 cut(s)	88
SsiI	CCGC	3 cut(s)	6, 133, 266
StyD4I	CCNGG	1 cut(s)	97
TatI	WGTACW	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.