Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

8241042 .. 8243861

Gene Structure 2820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGAACAGAACATCTATCACAAGAAGATGCACTAAAATCCCTGCGGCAAATCTGTAAGTCTGTTTGCCCCAATGATGGTTTTCTTGATCAGCTAAAAATGTATGAGAATATGGGCTTCAAGGTGGATCATGCCAGCCCCATATATAGGTCTTTTCACCTGAAAGTATTAGGTGAATCTTATCATCGTGGGAATAGAATAGACAGTTCTATATTTGGAGCAGATCCTGGTGTGGCTACTGAAGTTGCCTCTGGAGTGGAAGCAACTTCAAATGAAGGAAAAACTGTTAAACCAGCTTTCCGCTGCAAGAAATGTCGAAGAGTTGTTGCATTGCAGGACAATGTTGTGGATCACATTCCAGGTGAGGGAGAGCAATCCTTCGGTTGGCACAAGCGAAAAAGTAGCAACTCATATAATAAGTCTGAGGATTCTGAATCTGTATGTTCATCCATTTTTGTTGAGCCTCTAAAGTGGATGGCAGCAGTCGAAGAAGGTGCAATGGAGGGAAAGTTGTCCTGTGTGCATTGCAAGGCTCGCTTGGGTTACTTCAATTGGGCAGGCACCCAATGCAGTTGTGGAAGCTGGATAACCCCTGCCTTCCAGCTCCACAAAAGCCGAGTTGACGTCAGCACCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

213

Amino Acids

23.58

Weight (kDa)

8.05

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	560
AciI	CCGC	2 cut(s)	46, 301
AclWI	GGATC	3 cut(s)	135, 218, 357
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	624
AfiI	CCNNNNNNNGG	4 cut(s)	77, 147, 365, 384
AgsI	TTSAA	3 cut(s)	121, 270, 550
AjnI	CCWGG	2 cut(s)	226, 358
AluBI	AGCT	4 cut(s)	94, 296, 582, 604
AluI	AGCT	4 cut(s)	94, 296, 582, 604
AlwI	GGATC	3 cut(s)	135, 218, 357
AlwNI	CAGNNNCTG	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	303, 479
AsuHPI	GGTGA	3 cut(s)	149, 185, 374
BanI	GGYRCC	1 cut(s)	560
BbvI	GCAGC	2 cut(s)	290, 491
BccI	CCATC	2 cut(s)	71, 469
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	2 cut(s)	228, 360
BclI	TGATCA	1 cut(s)	88
BisI	GCNGC	3 cut(s)	47, 304, 480
BlsI	GCNGC	3 cut(s)	48, 305, 481
Bme1390I	CCNGG	2 cut(s)	228, 360
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	2 cut(s)	228, 360
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 147, 365, 384
Bse3DI	GCAATG	3 cut(s)	329, 504, 523
BseBI	CCWGG	2 cut(s)	228, 360
BseGI	GGATG	2 cut(s)	446, 480
BseLI	CCNNNNNNNGG	4 cut(s)	77, 147, 365, 384
BseMI	GCAATG	3 cut(s)	329, 504, 523
BseMII	CTCAG	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	290, 491
BshNI	GGYRCC	1 cut(s)	560
BslI	CCNNNNNNNGG	4 cut(s)	77, 147, 365, 384
Bsp143I	GATC	4 cut(s)	88, 127, 223, 349
BspACI	CCGC	2 cut(s)	46, 301
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	3 cut(s)	135, 218, 357
BspT107I	GGYRCC	1 cut(s)	560
BsrDI	GCAATG	3 cut(s)	329, 504, 523
BssMI	GATC	4 cut(s)	88, 127, 223, 349
BssNI	GRCGYC	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	228, 360
Bst4CI	ACNGT	2 cut(s)	206, 286
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	136, 535, 559
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	446, 480
BstKTI	GATC	4 cut(s)	91, 130, 226, 352
BstMBI	GATC	4 cut(s)	88, 127, 223, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 567
BstNI	CCWGG	2 cut(s)	228, 360
BstSCI	CCNGG	2 cut(s)	226, 358
BstV1I	GCAGC	2 cut(s)	290, 491
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	446, 480
Cac8I	GCNNGC	3 cut(s)	136, 535, 559
CaiI	CAGNNNCTG	1 cut(s)	227
CviAII	CATG	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	4 cut(s)	90, 129, 225, 351
DpnII	GATC	4 cut(s)	88, 127, 223, 349
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	226, 358
FaeI	CATG	1 cut(s)	134
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FatI	CATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	47, 304, 480
FokI	GGATG	2 cut(s)	433, 487
Fsp4HI	GCNGC	3 cut(s)	47, 304, 480
GluI	GCNGC	3 cut(s)	47, 304, 480
GsuI	CTGGAG	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	3 cut(s)	176, 428, 434
HphI	GGTGA	3 cut(s)	149, 185, 374
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	2 cut(s)	424, 433
Hpy188III	TCNNGA	2 cut(s)	86, 252
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	4 cut(s)	269, 388, 485, 607
HpyCH4III	ACNGT	2 cut(s)	206, 286
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	8 cut(s)	32, 306, 329, 334, 497, 523, 528, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 567
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 127, 223, 349
LmnI	GCTCC	2 cut(s)	218, 609
Lsp1109I	GCAGC	2 cut(s)	290, 491
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	4 cut(s)	90, 129, 225, 351
MboI	GATC	4 cut(s)	88, 127, 223, 349
MboII	GAAGA	3 cut(s)	38, 330, 500
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	1 cut(s)	550
MnlI	CCTC	5 cut(s)	259, 358, 418, 474, 496
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	303
MspR9I	CCNGG	2 cut(s)	228, 360
MunI	CAATTG	1 cut(s)	550
MvaI	CCWGG	2 cut(s)	228, 360
MwoI	GCNNNNNNNGC	2 cut(s)	534, 567
NdeII	GATC	4 cut(s)	88, 127, 223, 349
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	176, 428, 434
PkrI	GCNGC	3 cut(s)	48, 305, 481
Psp6I	CCWGG	2 cut(s)	226, 358
PspGI	CCWGG	2 cut(s)	226, 358
PspN4I	GGNNCC	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	47, 304, 480
Sau3AI	GATC	4 cut(s)	88, 127, 223, 349
ScrFI	CCNGG	2 cut(s)	228, 360
SfaNI	GCATC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	550
SsiI	CCGC	2 cut(s)	46, 301
StyD4I	CCNGG	2 cut(s)	226, 358
TaaI	ACNGT	2 cut(s)	206, 286
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	316, 486
TasI	AATT	1 cut(s)	550
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	3 cut(s)	176, 428, 434
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	2 cut(s)	303, 479
TspDTI	ATGAA	2 cut(s)	288, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
ZraI	GACGTC	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.