Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

3664625 .. 3665062

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTAGCGAAGAAATTGAAATTCCCTCCGGAGTGGAAGCAGCAAACCCAATTAACGGAGGAGCTGAAGAAACCGTTACACCAGCAGCCTTCCGCTGTAAGAAATGCCGAAGAGTTGTTGCATCGCAGGACAATGTTCTGGATCACAAACCGGGCGAGGGAGAGCAATCGTGGCGGCGCAAACCCAAAAGTGGGGGTGGTGATGGCGGCAGCTCGAAGTCGGAGGAGGAGGGTTCAAAATATTGTTCGTCGATTTTTGTGGACGAGCCTCCAATGTGGATGAAGACGGCGGTCGGAGAAGGTGCAGTGGAGGGGAAGTTGTACTGCGGACATTGTAAGTCTCGGTTGGGTTGCTTCAATTGGGCAGGCACCCAATGCAGTTGCGGTGCGTGGATCACCCCCGCCTTTCAGCTCCATAAAAGCCGGCTCGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

146

Amino Acids

15.61

Weight (kDa)

6.3

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	7 cut(s)	94, 175, 207, 290, 327, 384, 402
AclWI	GGATC	2 cut(s)	150, 401
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	4 cut(s)	56, 158, 191, 192
AgsI	TTSAA	3 cut(s)	20, 237, 358
AluBI	AGCT	3 cut(s)	65, 213, 412
AluI	AGCT	3 cut(s)	65, 213, 412
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	150, 401
Aor13HI	TCCGGA	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	41, 86, 210
ApoI	RAATTY	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	212, 388
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	53, 98, 222
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	5 cut(s)	42, 87, 176, 208, 211
BlsI	GCNGC	5 cut(s)	43, 88, 177, 209, 212
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	131
BoxI	GACNNNNGTC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 158, 191, 192
Bse118I	RCCGGY	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	29
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	4 cut(s)	56, 158, 191, 192
BseRI	GAGGAG	3 cut(s)	75, 239, 242
BseXI	GCAGC	3 cut(s)	53, 98, 222
BsgI	GTGCAG	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	294
BsiSI	CCGG	3 cut(s)	30, 152, 424
BslI	CCNNNNNNNGG	4 cut(s)	56, 158, 191, 192
BsmAI	GTCTC	1 cut(s)	345
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	142, 393
BspACI	CCGC	7 cut(s)	94, 175, 207, 290, 327, 384, 402
BspEI	TCCGGA	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	2 cut(s)	150, 401
BspT107I	GGYRCC	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	423
BssMI	GATC	2 cut(s)	142, 393
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	367, 425
BstF5I	GGATG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	2 cut(s)	145, 396
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	2 cut(s)	142, 393
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 375
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	53, 98, 222
BstV2I	GAAGAC	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	285
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	367, 425
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	322
CviJI	RGCY	7 cut(s)	65, 89, 213, 268, 412, 423, 427
CviKI_1	RGCY	7 cut(s)	65, 89, 213, 268, 412, 423, 427
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	2 cut(s)	144, 395
DpnII	GATC	2 cut(s)	142, 393
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	87
FaiI	YATR	3 cut(s)	417, 434, 436
FauI	CCCGC	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	434
Fnu4HI	GCNGC	5 cut(s)	42, 87, 176, 208, 211
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	5 cut(s)	42, 87, 176, 208, 211
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	5 cut(s)	42, 87, 176, 208, 211
HapII	CCGG	3 cut(s)	30, 152, 424
HhaI	GCGC	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	30, 152, 424
HphI	GGTGA	2 cut(s)	212, 388
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	223, 296
Hpy188III	TCNNGA	2 cut(s)	30, 140
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	100, 293
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	122, 305, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 375
HspAI	GCGC	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	423
KroNI	GCCGGC	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	142, 393
LmnI	GCTCC	2 cut(s)	62, 417
LpnPI	CCDG	6 cut(s)	43, 96, 113, 125, 165, 351
Lsp1109I	GCAGC	3 cut(s)	53, 98, 222
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	144, 395
MboI	GATC	2 cut(s)	142, 393
MboII	GAAGA	4 cut(s)	23, 80, 123, 295
MfeI	CAATTG	1 cut(s)	358
MluCI	AATT	4 cut(s)	15, 21, 51, 358
MmeI	TCCRAC	2 cut(s)	201, 274
MnlI	CCTC	8 cut(s)	37, 53, 151, 217, 220, 223, 279, 304
MroI	TCCGGA	1 cut(s)	29
MroNI	GCCGGC	1 cut(s)	423
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	30, 152, 424
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	172, 375
NaeI	GCCGGC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	2 cut(s)	142, 393
NgoMIV	GCCGGC	1 cut(s)	423
NlaIV	GGNNCC	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	425
PkrI	GCNGC	5 cut(s)	43, 88, 177, 209, 212
PshAI	GACNNNNGTC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	5 cut(s)	42, 87, 176, 208, 211
Sau3AI	GATC	2 cut(s)	142, 393
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	4 cut(s)	67, 215, 304, 414
SfaNI	GCATC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	15, 21, 51, 358
SsiI	CCGC	7 cut(s)	94, 175, 207, 290, 327, 384, 402
SspI	AATATT	1 cut(s)	242
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	3 cut(s)	215, 251, 429
TasI	AATT	4 cut(s)	15, 21, 51, 358
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	2 cut(s)	178, 210
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	3 cut(s)	41, 86, 210
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.