Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

33491036 .. 33495379

Gene Structure 4344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCCGCACCTAGTTCGCGAGAATCTCTTCATCGGCAACATCACCGACGCAGTCGACGTACTCCAGAACGGCAGCGCCACCGTCACTCATATTCTCTCCGTCCTCAGCTCCGCCTCGATTTCCTTCTTCTCCGAATACAAGAAGGGTCTCACCATCCCCACCAAGGAGATAACCAAGGTCTACGCCGGCGGCGGCGGCGCCTCCGCCTCCGAGGATGATGGCTCCGGGGGTAAGCTGCTGTACTTGTTGGAATATGCGGGGAAGGATTTGAAGCTGGTGAGAATGGGGGTTCCTGTTAGGGATATGGAGAGTGAGAATTTGCTGGATTATTTGGAGGTGTGTTTGGATTTTATTGATAAGAGTAGAAAAGAGGGTGCAGCTATCATTACAGCATATCTTATGAGAACAGAACAGTTATCGCAAGAAGATGCACTAGGATCCCTGCGACAGAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAAATCAGCTAAAAATGTACGAAGATATGGGTTTCAAGGTTGATCATGCCAGCCCCATATATAAGTCTTTTCGCCTCAAAATATTGGGTGAATCTTATTATCGCGGAGATAAAATAGACAGCTCTAAATTTGGTGCTGATCCTGGTTTGCCCAGTGAAGTTACCTCTCAAGTGGAATCATCTCCAATCGGAGGAAAAAATGGGACATCTGCATTTCGCTGCAAAAAATGCCGAAGACTTGTTGCAGTACAGGATAATGTTGTGGACCACATTCCAGGTCAGGGTGAGACATCTTTTGAATGGCGCAAGCGGAAAAGTAGCAACTATAACAACTTTGAGGATTCTGAATGTTCATCCATATTTGTTGAGCCTCTAAAATGGATGACAGCAGTGGAAGAAGGTGCAATGGAGGGCAAGTTGTCCTGTGCACATTGTGAAGCTCGTCTGGGTTACTTCAACTGGTCAGGCATCCAATGCAGTTGCGGGAGCTGGATCACCCCCGCCTTCCAGCTCCATAGAAGCCGAGTGGACATGAGCAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

342

Amino Acids

37.79

Weight (kDa)

5.53

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	126 - 170	6.1e-07	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	54, 180
AccII	CGCG	2 cut(s)	18, 588
AclWI	GGATC	4 cut(s)	432, 445, 617, 983
AcsI	RAATTY	2 cut(s)	316, 611
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	4 cut(s)	60, 242, 503, 732
AfiI	CCNNNNNNNGG	4 cut(s)	163, 476, 674, 764
AgsI	TTSAA	4 cut(s)	271, 520, 782, 940
AjnI	CCWGG	2 cut(s)	625, 757
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	2 cut(s)	152, 764
Alw44I	GTGCAC	1 cut(s)	909
AlwI	GGATC	4 cut(s)	432, 445, 617, 983
ApaLI	GTGCAC	1 cut(s)	909
ApeKI	GCWGC	4 cut(s)	72, 235, 377, 702
ApoI	RAATTY	2 cut(s)	316, 611
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	77, 200, 789
AspS9I	GGNCC	1 cut(s)	748
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	6 cut(s)	34, 142, 289, 584, 779, 970
AvaII	GGWCC	1 cut(s)	748
BaeGI	GKGCMC	1 cut(s)	913
BamHI	GGATCC	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	724
Bbv12I	GWGCWC	1 cut(s)	913
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	84, 222, 389, 689
BccI	CCATC	3 cut(s)	161, 212, 470
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	627, 759
BclI	TGATCA	1 cut(s)	526
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	152, 764
BfaI	CTAG	2 cut(s)	11, 434
BfoI	RGCGCY	2 cut(s)	78, 201
BisI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 378, 703
BlsI	GCNGC	8 cut(s)	6, 74, 191, 194, 197, 237, 379, 704
Bme1390I	CCNGG	3 cut(s)	226, 627, 759
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	1 cut(s)	748
BmiI	GGNNCC	4 cut(s)	199, 223, 291, 439
BmrFI	CCNGG	3 cut(s)	226, 627, 759
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	2 cut(s)	418, 960
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	724
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	162, 174, 210, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 476, 674, 764
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	636, 947
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	2 cut(s)	627, 759
BseDI	CCNNGG	4 cut(s)	162, 174, 210, 225
BseGI	GGATG	5 cut(s)	153, 220, 836, 870, 951
BseLI	CCNNNNNNNGG	4 cut(s)	163, 476, 674, 764
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	636, 947
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	4 cut(s)	84, 222, 389, 689
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	18, 588
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	913
BsiSI	CCGG	2 cut(s)	186, 225
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	4 cut(s)	163, 476, 674, 764
BsmAI	GTCTC	2 cut(s)	152, 764
BsmFI	GGGAC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	4 cut(s)	437, 526, 622, 975
Bsp68I	TCGCGA	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	18, 588
BspLI	GGNNCC	4 cut(s)	199, 223, 291, 439
BspPI	GGATC	4 cut(s)	432, 445, 617, 983
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	636, 947
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	162, 174, 210, 225
BssMI	GATC	4 cut(s)	437, 526, 622, 975
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	162, 174
Bst2UI	CCWGG	2 cut(s)	627, 759
Bst4CI	ACNGT	2 cut(s)	82, 414
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	2 cut(s)	711, 957
BstC8I	GCNNGC	3 cut(s)	187, 535, 791
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	5 cut(s)	153, 220, 836, 870, 951
BstFNI	CGCG	2 cut(s)	18, 588
BstH2I	RGCGCY	2 cut(s)	78, 201
BstHHI	GCGC	3 cut(s)	77, 200, 789
BstKTI	GATC	4 cut(s)	440, 529, 625, 978
BstMAI	GTCTC	2 cut(s)	152, 764
BstMBI	GATC	4 cut(s)	437, 526, 622, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 711, 957
BstNI	CCWGG	2 cut(s)	627, 759
BstSCI	CCNGG	3 cut(s)	224, 625, 757
BstSLI	GKGCMC	1 cut(s)	913
BstUI	CGCG	2 cut(s)	18, 588
BstV1I	GCAGC	4 cut(s)	84, 222, 389, 689
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BtsCI	GGATG	5 cut(s)	153, 220, 836, 870, 951
BtsI	GCAGTG	2 cut(s)	879, 1027
BtsIMutI	CAGTG	3 cut(s)	643, 879, 1027
BtuMI	TCGCGA	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	187, 535, 791
CfoI	GCGC	3 cut(s)	77, 200, 789
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	748
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	4 cut(s)	59, 241, 502, 731
CviAII	CATG	2 cut(s)	530, 1015
CviQI	GTAC	4 cut(s)	59, 241, 502, 731
DdeI	CTNAG	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	4 cut(s)	439, 528, 624, 977
DpnII	GATC	4 cut(s)	437, 526, 622, 975
DraIII	CACNNNGTG	1 cut(s)	917
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	100, 193
Eco130I	CCWWGG	2 cut(s)	162, 174
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	625, 757
EcoT14I	CCWWGG	2 cut(s)	162, 174
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	162, 174
FaeI	CATG	2 cut(s)	533, 1018
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	2 cut(s)	529, 1014
FauI	CCCGC	3 cut(s)	250, 959, 991
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	2 cut(s)	54, 180
Fnu4HI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 378, 703
FokI	GGATG	5 cut(s)	140, 227, 823, 877, 938
Fsp4HI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 378, 703
FspBI	CTAG	2 cut(s)	11, 434
GlaI	GCGC	3 cut(s)	76, 199, 788
GluI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 378, 703
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	2 cut(s)	78, 201
HapII	CCGG	2 cut(s)	186, 225
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	3 cut(s)	77, 200, 789
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	533, 1018
Hin6I	GCGC	3 cut(s)	75, 198, 787
HinP1I	GCGC	3 cut(s)	75, 198, 787
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	22, 575, 659, 824
HpaII	CCGG	2 cut(s)	186, 225
HphI	GGTGA	6 cut(s)	34, 142, 289, 584, 779, 970
Hpy166II	GTNNAC	5 cut(s)	55, 181, 748, 911, 1012
Hpy188I	TCNGA	4 cut(s)	133, 211, 674, 829
Hpy188III	TCNNGA	2 cut(s)	17, 64
Hpy8I	GTNNAC	5 cut(s)	55, 181, 748, 911, 1012
Hpy99I	CGWCG	2 cut(s)	50, 59
HpyAV	CCTTC	5 cut(s)	133, 136, 256, 875, 997
HpyCH4III	ACNGT	2 cut(s)	82, 414
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	8 cut(s)	377, 431, 695, 705, 728, 887, 911, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 711, 957
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	533, 1018
HspAI	GCGC	3 cut(s)	75, 198, 787
KasI	GGCGCC	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	437, 526, 622, 975
LmnI	GCTCC	4 cut(s)	113, 227, 969, 999
Lsp1109I	GCAGC	4 cut(s)	84, 222, 389, 689
LweI	GCATC	2 cut(s)	418, 960
MaeI	CTAG	2 cut(s)	11, 434
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	82, 643, 932
MalI	GATC	4 cut(s)	439, 528, 624, 977
MboI	GATC	4 cut(s)	437, 526, 622, 975
MboII	GAAGA	6 cut(s)	19, 118, 437, 518, 729, 890
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	913
MluCI	AATT	2 cut(s)	316, 611
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	228
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	2 cut(s)	186, 225
MspR9I	CCNGG	3 cut(s)	226, 627, 759
MvaI	CCWGG	2 cut(s)	627, 759
MvnI	CGCG	2 cut(s)	18, 588
MwoI	GCNNNNNNNGC	3 cut(s)	195, 711, 957
NaeI	GCCGGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	4 cut(s)	437, 526, 622, 975
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	533, 1018
NlaIV	GGNNCC	4 cut(s)	199, 223, 291, 439
NmuCI	GTSAC	1 cut(s)	82
NruI	TCGCGA	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	22, 575, 659, 824
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	8 cut(s)	6, 74, 191, 194, 197, 237, 379, 704
PluTI	GGCGCC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	625, 757
PspGI	CCWGG	2 cut(s)	625, 757
PspN4I	GGNNCC	4 cut(s)	199, 223, 291, 439
PspPI	GGNCC	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	437
PsyI	GACNNNGTC	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	18
RsaI	GTAC	4 cut(s)	60, 242, 503, 732
RsaNI	GTAC	4 cut(s)	59, 241, 502, 731
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 378, 703
Sau3AI	GATC	4 cut(s)	437, 526, 622, 975
Sau96I	GGNCC	1 cut(s)	748
ScrFI	CCNGG	3 cut(s)	226, 627, 759
SduI	GDGCHC	1 cut(s)	913
SfaNI	GCATC	2 cut(s)	418, 960
SfoI	GGCGCC	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	748
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	2 cut(s)	316, 611
SspDI	GGCGCC	1 cut(s)	197
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	2 cut(s)	11, 434
StyD4I	CCNGG	3 cut(s)	224, 625, 757
StyI	CCWWGG	2 cut(s)	162, 174
TaaI	ACNGT	2 cut(s)	82, 414
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	54, 116
TasI	AATT	2 cut(s)	316, 611
TatI	WGTACW	2 cut(s)	240, 730
TauI	GCSGC	4 cut(s)	7, 192, 195, 198
TfiI	GAWTC	4 cut(s)	22, 575, 659, 824
TscAI	CASTG	3 cut(s)	643, 879, 1027
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	72, 235, 377, 702
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	19, 825
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	643, 879, 1027
Tth111I	GACNNNGTC	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	909
VpaK11BI	GGWCC	1 cut(s)	748
XapI	RAATTY	2 cut(s)	316, 611
XmiI	GTMKAC	2 cut(s)	54, 180
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	11, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.