Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

6387032 .. 6390758

Gene Structure 3727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G034500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCCGTATCTTGTTCGTGAGAATCTATTCATCGGCAACATCGGCGATGCAGCAGAGGTTCTCCAAAATGGCAGCACAGAGATCACACACATTCTCTCAGTTCTGAGTTCTGCATCAATCTCGTTTTTCTCCGAATGGAAGAAGGGTCTTACAATTCCCACTAAGGAAATCAAGAAGGTGTATACTGGCGGGTCTGTTGGTGGGTCGGCTTCTGTGGACGATTCTGGTGATGGGTCGAAAAGTTGTTTGCTCTCGGATAAGCTTTTGTACTTGTTGGAATATGCAGGCAAGGATTTGAAGCTGGTGAGGATGGGGGTTCCGCTGAGAGATATGGAGAATGAGAATTTATTGGATTATTTGGATGTCTGTTTGGATTTTATTGACAAGAGTAGAAAAGAGGGGTCTGTTTTGGTGCATTGCTTTGCTGGTGTTTCCAGAAGTGCAGCTATCATTACAGCATATCTGATGAGAACAGAACATTTATCACAAGAAGATGCACTAGGATCCCTGAGGCAAAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAGATCAGCTCAAAATGTACGAGGAAATGGGCTTCAAGGTTGATCATGCCAGCCCCATATATAAGTCTTTTCACCTGAAAGTATTGGGAGAATCTTATCATCGTGGTGATAAAATAGACAGTTCCAAATTTGGGGCAGATCCTGGGTTGCCTATTGAAGTTGCCTCTGGGGTAGAATCAGCTCAAAATGGAGGAAAAACTGGTACAACAGCTTTCCGCTGCAAGAAATGCCGAAGAGTTGTTGCATTGCAGGACAATGTTGTGGATCACATTCCAGGGGAGGGTGAAAAATCGTTTGAGTGGCGAAAGCGAAAAAGTAGCAACTTGTCTGAGGATTCTGAATGTTCATCCATTTTTGTTGAGCCTCTAAGGTGGATGACAGCAGTTGAAGAAGGAGCACTGGAGGGCAAGTTGTCATGTGCACATTGTGAAGCTCGATTGGGTTACTTCAATTGGTCAGGCATCCAATGCAGTTGCGGGAGTTGGATCACCCCCGCCTTCCAGCTTCATAGAAGCCGTGTGGACGTCAGCACTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

363

Amino Acids

39.84

Weight (kDa)

5.68

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1077
AccI	GTMKAC	1 cut(s)	182
AciI	CCGC	5 cut(s)	189, 320, 766, 1026, 1044
AclWI	GGATC	5 cut(s)	498, 511, 683, 822, 1043
AcsI	RAATTY	2 cut(s)	343, 677
AcyI	GRCGYC	1 cut(s)	1074
AdeI	CACNNNGTG	1 cut(s)	977
AfaI	GTAC	3 cut(s)	269, 569, 754
AfiI	CCNNNNNNNGG	3 cut(s)	542, 681, 830
AgsI	TTSAA	5 cut(s)	298, 586, 707, 938, 1000
AjnI	CCWGG	2 cut(s)	691, 823
AluBI	AGCT	9 cut(s)	262, 301, 446, 519, 559, 731, 761, 983, 1054
AluI	AGCT	9 cut(s)	262, 301, 446, 519, 559, 731, 761, 983, 1054
Alw21I	GWGCWC	2 cut(s)	949, 973
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	5 cut(s)	498, 511, 683, 822, 1043
AlwNI	CAGNNNCTG	1 cut(s)	692
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	4 cut(s)	50, 72, 443, 768
ApoI	RAATTY	2 cut(s)	343, 677
Asp700I	GAANNNNTTC	1 cut(s)	26
AsuHPI	GGTGA	6 cut(s)	239, 316, 614, 668, 845, 1030
AxyI	CCTNAGG	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	973
BamHI	GGATCC	1 cut(s)	503
Bbv12I	GWGCWC	2 cut(s)	949, 973
BbvI	GCAGC	4 cut(s)	62, 84, 455, 755
BccI	CCATC	3 cut(s)	224, 304, 536
BceAI	ACGGC	1 cut(s)	1050
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	2 cut(s)	693, 825
BclI	TGATCA	1 cut(s)	592
BfaI	CTAG	2 cut(s)	500, 551
BisI	GCNGC	4 cut(s)	51, 73, 444, 769
BlsI	GCNGC	4 cut(s)	52, 74, 445, 770
Bme1390I	CCNGG	2 cut(s)	693, 825
BmiI	GGNNCC	2 cut(s)	318, 505
BmrFI	CCNGG	2 cut(s)	693, 825
BmsI	GCATC	4 cut(s)	37, 122, 484, 1020
BpmI	CTGGAG	1 cut(s)	971
BsaHI	GRCGYC	1 cut(s)	1074
BsaJI	CCNNGG	2 cut(s)	692, 824
BsaXI	ACNNNNNCTCC	2 cut(s)	944, 974
Bsc4I	CCNNNNNNNGG	3 cut(s)	542, 681, 830
Bse1I	ACTGG	3 cut(s)	190, 754, 954
Bse21I	CCTNAGG	1 cut(s)	509
Bse3DI	GCAATG	2 cut(s)	415, 794
BseBI	CCWGG	2 cut(s)	693, 825
BseDI	CCNNGG	2 cut(s)	692, 824
BseGI	GGATG	5 cut(s)	315, 367, 896, 930, 1011
BseLI	CCNNNNNNNGG	3 cut(s)	542, 681, 830
BseMI	GCAATG	2 cut(s)	415, 794
BseMII	CTCAG	5 cut(s)	95, 111, 314, 500, 870
BseNI	ACTGG	3 cut(s)	190, 754, 954
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	4 cut(s)	62, 84, 455, 755
BsgI	GTGCAG	1 cut(s)	462
BsiHKAI	GWGCWC	2 cut(s)	949, 973
BslI	CCNNNNNNNGG	3 cut(s)	542, 681, 830
Bsp1286I	GDGCHC	2 cut(s)	949, 973
Bsp143I	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
BspACI	CCGC	5 cut(s)	189, 320, 766, 1026, 1044
BspCNI	CTCAG	5 cut(s)	96, 110, 315, 501, 871
BspLI	GGNNCC	2 cut(s)	318, 505
BspPI	GGATC	5 cut(s)	498, 511, 683, 822, 1043
BsrDI	GCAATG	2 cut(s)	415, 794
BsrI	ACTGG	3 cut(s)	190, 754, 954
BssECI	CCNNGG	2 cut(s)	692, 824
BssMI	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
BssNAI	GTATAC	1 cut(s)	183
BssNI	GRCGYC	1 cut(s)	1074
Bst1107I	GTATAC	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	693, 825
Bst4CI	ACNGT	2 cut(s)	671, 1084
Bst6I	CTCTTC	1 cut(s)	778
BstACI	GRCGYC	1 cut(s)	1074
BstAPI	GCANNNNNTGC	2 cut(s)	777, 1017
BstC8I	GCNNGC	2 cut(s)	286, 601
BstDEI	CTNAG	7 cut(s)	97, 104, 162, 323, 509, 879, 917
BstF5I	GGATG	5 cut(s)	315, 367, 896, 930, 1011
BstKTI	GATC	7 cut(s)	84, 506, 556, 595, 691, 817, 1038
BstMBI	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 777, 1017
BstNI	CCWGG	2 cut(s)	693, 825
BstSCI	CCNGG	2 cut(s)	691, 823
BstSLI	GKGCMC	1 cut(s)	973
BstV1I	GCAGC	4 cut(s)	62, 84, 455, 755
BstX2I	RGATCY	2 cut(s)	503, 688
BstYI	RGATCY	2 cut(s)	503, 688
BstZ17I	GTATAC	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	509
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	5 cut(s)	315, 367, 896, 930, 1011
BtsIMutI	CAGTG	2 cut(s)	947, 1080
Cac8I	GCNNGC	2 cut(s)	286, 601
CaiI	CAGNNNCTG	1 cut(s)	692
Csp6I	GTAC	3 cut(s)	268, 568, 753
CviAII	CATG	2 cut(s)	596, 966
CviQI	GTAC	3 cut(s)	268, 568, 753
DdeI	CTNAG	7 cut(s)	97, 104, 162, 323, 509, 879, 917
DpnI	GATC	7 cut(s)	83, 505, 555, 594, 690, 816, 1037
DpnII	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
DraIII	CACNNNGTG	1 cut(s)	977
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Eco81I	CCTNAGG	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	691, 823
FaeI	CATG	2 cut(s)	599, 969
FatI	CATG	2 cut(s)	595, 965
FauI	CCCGC	3 cut(s)	182, 1019, 1051
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	4 cut(s)	51, 73, 444, 769
FokI	GGATG	5 cut(s)	322, 374, 883, 937, 998
Fsp4HI	GCNGC	4 cut(s)	51, 73, 444, 769
FspBI	CTAG	2 cut(s)	500, 551
GluI	GCNGC	4 cut(s)	51, 73, 444, 769
GsuI	CTGGAG	1 cut(s)	971
Hin1I	GRCGYC	1 cut(s)	1074
Hin1II	CATG	2 cut(s)	599, 969
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	5 cut(s)	22, 221, 641, 725, 884
HphI	GGTGA	6 cut(s)	239, 316, 614, 668, 845, 1030
Hpy166II	GTNNAC	4 cut(s)	183, 217, 971, 1072
Hpy188I	TCNGA	6 cut(s)	105, 133, 256, 465, 880, 889
Hpy188III	TCNNGA	4 cut(s)	17, 172, 435, 551
Hpy8I	GTNNAC	4 cut(s)	183, 217, 971, 1072
HpyAV	CCTTC	4 cut(s)	136, 169, 935, 1057
HpyCH4III	ACNGT	2 cut(s)	671, 1084
HpyCH4IV	ACGT	1 cut(s)	1074
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 777, 1017
HpyF3I	CTNAG	7 cut(s)	97, 104, 162, 323, 509, 879, 917
HpySE526I	ACGT	1 cut(s)	1074
Hsp92I	GRCGYC	1 cut(s)	1074
Hsp92II	CATG	2 cut(s)	599, 969
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
LmnI	GCTCC	1 cut(s)	944
Lsp1109I	GCAGC	4 cut(s)	62, 84, 455, 755
LweI	GCATC	4 cut(s)	37, 122, 484, 1020
MaeI	CTAG	2 cut(s)	500, 551
MaeII	ACGT	1 cut(s)	1074
MaeIII	GTNAC	1 cut(s)	992
MalI	GATC	7 cut(s)	83, 505, 555, 594, 690, 816, 1037
MboI	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
MboII	GAAGA	4 cut(s)	151, 503, 795, 950
MfeI	CAATTG	1 cut(s)	1000
MflI	RGATCY	2 cut(s)	503, 688
MhlI	GDGCHC	2 cut(s)	949, 973
MluCI	AATT	4 cut(s)	153, 343, 677, 1000
MmeI	TCCRAC	2 cut(s)	255, 1013
MroXI	GAANNNNTTC	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	2 cut(s)	322, 768
MspR9I	CCNGG	2 cut(s)	693, 825
MunI	CAATTG	1 cut(s)	1000
MvaI	CCWGG	2 cut(s)	693, 825
MwoI	GCNNNNNNNGC	3 cut(s)	42, 777, 1017
NdeII	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
NlaIII	CATG	2 cut(s)	599, 969
NlaIV	GGNNCC	2 cut(s)	318, 505
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	5 cut(s)	22, 221, 641, 725, 884
PkrI	GCNGC	4 cut(s)	52, 74, 445, 770
Psp6I	CCWGG	2 cut(s)	691, 823
PspGI	CCWGG	2 cut(s)	691, 823
PspN4I	GGNNCC	2 cut(s)	318, 505
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	503, 688
RsaI	GTAC	3 cut(s)	269, 569, 754
RsaNI	GTAC	3 cut(s)	268, 568, 753
RseI	CAYNNNNRTG	1 cut(s)	654
SatI	GCNGC	4 cut(s)	51, 73, 444, 769
Sau3AI	GATC	7 cut(s)	81, 503, 553, 592, 688, 814, 1035
ScrFI	CCNGG	2 cut(s)	693, 825
SduI	GDGCHC	2 cut(s)	949, 973
SfaNI	GCATC	4 cut(s)	37, 122, 484, 1020
SmiMI	CAYNNNNRTG	1 cut(s)	654
Sse9I	AATT	4 cut(s)	153, 343, 677, 1000
SsiI	CCGC	5 cut(s)	189, 320, 766, 1026, 1044
SspMI	CTAG	2 cut(s)	500, 551
StyD4I	CCNGG	2 cut(s)	691, 823
TaaI	ACNGT	2 cut(s)	671, 1084
TaiI	ACGT	1 cut(s)	1077
TaqI	TCGA	2 cut(s)	236, 985
TasI	AATT	4 cut(s)	153, 343, 677, 1000
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	5 cut(s)	22, 221, 641, 725, 884
TscAI	CASTG	2 cut(s)	954, 1087
TseI	GCWGC	4 cut(s)	50, 72, 443, 768
TspDTI	ATGAA	3 cut(s)	19, 885, 1046
TspRI	CASTG	2 cut(s)	954, 1087
VneI	GTGCAC	1 cut(s)	969
XapI	RAATTY	2 cut(s)	343, 677
XbaI	TCTAGA	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	500, 551
ZraI	GACGTC	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.