Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Forward (+)

33458018 .. 33462694

Gene Structure 4677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCCGCACCTCGTTCGCGAGAATCTCTTCATCGGCAACATCACCGACGCAGTCGACGTACTCCAGAACGGCAGCGCCACCGTCACTCATATTCTCTCCGTCCTCAGCTCCGCCTCGATTTCCTTCTTCTCCGAATACAAGAAGGGTCTCACCATCCCCACCAAGGAGATAACCAAGGTCTACGCCGGCGGCGGCGGCGCCTCCGCCTCCGAGGATGATGGCTCCGGGGGTAAGCTGCTGTACTTGTTGGAATATGCGGGGAAGGATTTGAAGCTGGTGAGAATGGGGGTTCCTGTTAGGGATATGGAGAGTGAGAATTTGCTGGATTATTTGGAGGTGTGTTTGGATTTTATTGATAAGAGTAGAAAAGAGGGGTCTGTTTTGGTGCATTGCTTTGCTGGTGTGTCTAGAAGTGCAGCTATCATTACAGCATATCTTATGAGAACAGAACAGTTATCGCAAGAAGATGCACTAGGATCCCTGCGACAGAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAAATCAGCTAAAAATGTACGAAGATATGGGCTTCAAGGTTGATCAAGCCAGCCCCATATATAAGTCTTTTCGCCTCAAAATATTGGGTGAATCTTATTATCGCGGAGATAAAATAGACAGCTCTAAATTTGGTGCTGATCCTGGTTTGCCCAGTGAAGTTACCTCTCAAGTGGAATCATCTCCAATCGGAGGAAAAAATGGGACATCTGCATTTCGCTGCAAAAAATGCCGAAGACTTGTTGCAGTAAAGGATAATGTTGTGGACCACATTCCAGGTCAGGGTGAGACATCTTTTGAATGGCGCAAGCGGAAAAGTAGCAACTATAACAACTTTGAGGATTCTGAATGTTCATCCATATTTGTTGAGCCTCTAAAATGGATGACAGCAGTGGAAGAAGGTGCAATGGAGGGCAAGTTGTCCTGTGCACATTGTGAAGCTCGTCTGGGTTACTTCAACTGGTCAGGCATCCAATGCAGTTGCGGGAGCTGGATCACCCCCGCCTTCCAGCTCCATAGAAGCCGAGTGGACATGAGCAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

355

Amino Acids

39.12

Weight (kDa)

5.8

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	91 - 183	6.2e-25	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	91 - 150	8.9e-07	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	54, 180
AccII	CGCG	2 cut(s)	18, 627
AclWI	GGATC	4 cut(s)	471, 484, 656, 1022
AcsI	RAATTY	2 cut(s)	316, 650
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	956
AfaI	GTAC	3 cut(s)	60, 242, 542
AfiI	CCNNNNNNNGG	4 cut(s)	163, 515, 713, 803
AgsI	TTSAA	4 cut(s)	271, 559, 821, 979
AjnI	CCWGG	2 cut(s)	664, 796
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	2 cut(s)	152, 803
Alw44I	GTGCAC	1 cut(s)	948
AlwI	GGATC	4 cut(s)	471, 484, 656, 1022
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	4 cut(s)	72, 235, 416, 741
ApoI	RAATTY	2 cut(s)	316, 650
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	77, 200, 828
AspS9I	GGNCC	1 cut(s)	787
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	6 cut(s)	34, 142, 289, 623, 818, 1009
AvaII	GGWCC	1 cut(s)	787
BaeGI	GKGCMC	1 cut(s)	952
BamHI	GGATCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	952
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	84, 222, 428, 728
BccI	CCATC	3 cut(s)	161, 212, 509
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	666, 798
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	152, 803
BfaI	CTAG	2 cut(s)	408, 473
BfoI	RGCGCY	2 cut(s)	78, 201
BisI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 417, 742
BlsI	GCNGC	8 cut(s)	6, 74, 191, 194, 197, 237, 418, 743
Bme1390I	CCNGG	3 cut(s)	226, 666, 798
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	4 cut(s)	199, 223, 291, 478
BmrFI	CCNGG	3 cut(s)	226, 666, 798
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	2 cut(s)	457, 999
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	763
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	162, 174, 210, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	923, 953
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 515, 713, 803
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	675, 986
Bse3DI	GCAATG	2 cut(s)	388, 933
BseBI	CCWGG	2 cut(s)	666, 798
BseDI	CCNNGG	4 cut(s)	162, 174, 210, 225
BseGI	GGATG	5 cut(s)	153, 220, 875, 909, 990
BseLI	CCNNNNNNNGG	4 cut(s)	163, 515, 713, 803
BseMI	GCAATG	2 cut(s)	388, 933
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	675, 986
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	4 cut(s)	84, 222, 428, 728
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	2 cut(s)	18, 627
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	952
BsiSI	CCGG	2 cut(s)	186, 225
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	4 cut(s)	163, 515, 713, 803
BsmAI	GTCTC	2 cut(s)	152, 803
BsmFI	GGGAC	1 cut(s)	739
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	4 cut(s)	476, 565, 661, 1014
Bsp68I	TCGCGA	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	18, 627
BspLI	GGNNCC	4 cut(s)	199, 223, 291, 478
BspPI	GGATC	4 cut(s)	471, 484, 656, 1022
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	388, 933
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	675, 986
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	162, 174, 210, 225
BssMI	GATC	4 cut(s)	476, 565, 661, 1014
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	162, 174
Bst2UI	CCWGG	2 cut(s)	666, 798
Bst4CI	ACNGT	2 cut(s)	82, 453
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	2 cut(s)	750, 996
BstC8I	GCNNGC	3 cut(s)	187, 574, 830
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	5 cut(s)	153, 220, 875, 909, 990
BstFNI	CGCG	2 cut(s)	18, 627
BstH2I	RGCGCY	2 cut(s)	78, 201
BstHHI	GCGC	3 cut(s)	77, 200, 828
BstKTI	GATC	4 cut(s)	479, 568, 664, 1017
BstMAI	GTCTC	2 cut(s)	152, 803
BstMBI	GATC	4 cut(s)	476, 565, 661, 1014
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 750, 996
BstNI	CCWGG	2 cut(s)	666, 798
BstSCI	CCNGG	3 cut(s)	224, 664, 796
BstSLI	GKGCMC	1 cut(s)	952
BstUI	CGCG	2 cut(s)	18, 627
BstV1I	GCAGC	4 cut(s)	84, 222, 428, 728
BstV2I	GAAGAC	1 cut(s)	763
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BtsCI	GGATG	5 cut(s)	153, 220, 875, 909, 990
BtsI	GCAGTG	2 cut(s)	918, 1066
BtsIMutI	CAGTG	3 cut(s)	682, 918, 1066
BtuMI	TCGCGA	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	187, 574, 830
CfoI	GCGC	3 cut(s)	77, 200, 828
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	787
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	59, 241, 541
CviAII	CATG	1 cut(s)	1054
CviQI	GTAC	3 cut(s)	59, 241, 541
DdeI	CTNAG	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	4 cut(s)	478, 567, 663, 1016
DpnII	GATC	4 cut(s)	476, 565, 661, 1014
DraIII	CACNNNGTG	1 cut(s)	956
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	100, 193
Eco130I	CCWWGG	2 cut(s)	162, 174
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	787
EcoRII	CCWGG	2 cut(s)	664, 796
EcoT14I	CCWWGG	2 cut(s)	162, 174
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	162, 174
FaeI	CATG	1 cut(s)	1057
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	1 cut(s)	1053
FauI	CCCGC	3 cut(s)	250, 998, 1030
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	2 cut(s)	54, 180
Fnu4HI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 417, 742
FokI	GGATG	5 cut(s)	140, 227, 862, 916, 977
Fsp4HI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 417, 742
FspBI	CTAG	2 cut(s)	408, 473
GlaI	GCGC	3 cut(s)	76, 199, 827
GluI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 417, 742
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	2 cut(s)	78, 201
HapII	CCGG	2 cut(s)	186, 225
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	3 cut(s)	77, 200, 828
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	1057
Hin6I	GCGC	3 cut(s)	75, 198, 826
HinP1I	GCGC	3 cut(s)	75, 198, 826
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	22, 614, 698, 863
HpaII	CCGG	2 cut(s)	186, 225
HphI	GGTGA	6 cut(s)	34, 142, 289, 623, 818, 1009
Hpy166II	GTNNAC	5 cut(s)	55, 181, 787, 950, 1051
Hpy188I	TCNGA	4 cut(s)	133, 211, 713, 868
Hpy188III	TCNNGA	3 cut(s)	17, 64, 408
Hpy8I	GTNNAC	5 cut(s)	55, 181, 787, 950, 1051
Hpy99I	CGWCG	2 cut(s)	50, 59
HpyAV	CCTTC	5 cut(s)	133, 136, 256, 914, 1036
HpyCH4III	ACNGT	2 cut(s)	82, 453
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	9 cut(s)	388, 416, 470, 734, 744, 767, 926, 950, 999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 750, 996
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	1057
HspAI	GCGC	3 cut(s)	75, 198, 826
KasI	GGCGCC	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	476, 565, 661, 1014
LmnI	GCTCC	4 cut(s)	113, 227, 1008, 1038
Lsp1109I	GCAGC	4 cut(s)	84, 222, 428, 728
LweI	GCATC	2 cut(s)	457, 999
MaeI	CTAG	2 cut(s)	408, 473
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	82, 682, 971
MalI	GATC	4 cut(s)	478, 567, 663, 1016
MboI	GATC	4 cut(s)	476, 565, 661, 1014
MboII	GAAGA	6 cut(s)	19, 118, 476, 557, 768, 929
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	952
MluCI	AATT	2 cut(s)	316, 650
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	228
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	2 cut(s)	186, 225
MspR9I	CCNGG	3 cut(s)	226, 666, 798
MvaI	CCWGG	2 cut(s)	666, 798
MvnI	CGCG	2 cut(s)	18, 627
MwoI	GCNNNNNNNGC	3 cut(s)	195, 750, 996
NaeI	GCCGGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	4 cut(s)	476, 565, 661, 1014
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	1057
NlaIV	GGNNCC	4 cut(s)	199, 223, 291, 478
NmuCI	GTSAC	1 cut(s)	82
NruI	TCGCGA	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	22, 614, 698, 863
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	8 cut(s)	6, 74, 191, 194, 197, 237, 418, 743
PluTI	GGCGCC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	664, 796
PspGI	CCWGG	2 cut(s)	664, 796
PspN4I	GGNNCC	4 cut(s)	199, 223, 291, 478
PspPI	GGNCC	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	18
RsaI	GTAC	3 cut(s)	60, 242, 542
RsaNI	GTAC	3 cut(s)	59, 241, 541
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	8 cut(s)	5, 73, 190, 193, 196, 236, 417, 742
Sau3AI	GATC	4 cut(s)	476, 565, 661, 1014
Sau96I	GGNCC	1 cut(s)	787
ScrFI	CCNGG	3 cut(s)	226, 666, 798
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	2 cut(s)	457, 999
SfoI	GGCGCC	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	787
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	2 cut(s)	316, 650
SspDI	GGCGCC	1 cut(s)	197
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	2 cut(s)	408, 473
StyD4I	CCNGG	3 cut(s)	224, 664, 796
StyI	CCWWGG	2 cut(s)	162, 174
TaaI	ACNGT	2 cut(s)	82, 453
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	54, 116
TasI	AATT	2 cut(s)	316, 650
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	4 cut(s)	7, 192, 195, 198
TfiI	GAWTC	4 cut(s)	22, 614, 698, 863
TscAI	CASTG	3 cut(s)	682, 918, 1066
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	72, 235, 416, 741
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	19, 864
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	682, 918, 1066
Tth111I	GACNNNGTC	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	2 cut(s)	316, 650
XbaI	TCTAGA	1 cut(s)	407
XmiI	GTMKAC	2 cut(s)	54, 180
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	408, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.