Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004249.1

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

12135 .. 16004

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004249.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgccgcacctcgttcgcgagaatctcttcatcggcaacatcaccgacgcagtcgacgtactccagaacggcagcgccaccgtcactcatattctctccgtcctcagctccgcctcgatttccttcttctccgaatacaagaagggtctcaccatccccaccaaggagataaccaaggtctacgccggcgggggcggcgcctccgcctccgaggatgatggctccgggggtaagctgctgtacttgttggaatatgcggggaaggatttgaagctggtgagaatgggggttcctgttagggatatggagagtgagaatttgctggattatttggaggtgtgtttggattttattgataagagtagaaaagaggggtctgttttggtgcattgctttgctggtgaatgttattatcgcggagataaaatagacagctctaaatttggtgctgatcctggtttgcccagtgaagttacctctcaagtggaatcatctccaatcggaggaaaaaatgggacatctgcatttcgctgcaaaaaatgccgaagacttgttgcagtacaggataatgttgtggaccacattccaggtcagggtgagacatcttttgaatggcgcaagcggaaaagtagcaactataacaactttgaggattctgaatgttcatccatatttgttgagcctctaaaatggatgacagcagtggaagaaggtgcaatggagggcaagttgtcctgtgcacattgtgaagctcgtctgggttacttcaactggtcaggcatccaatgcagttgcgggagctggatcacccccgccttccagctccatagaagccgagtggacatgagcagtgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

285

Amino Acids

31.23

Weight (kDa)

5.6

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	54, 180
AccII	CGCG	2 cut(s)	18, 417
AclWI	GGATC	2 cut(s)	446, 812
AcsI	RAATTY	2 cut(s)	316, 440
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	3 cut(s)	60, 242, 561
AfiI	CCNNNNNNNGG	3 cut(s)	163, 503, 593
AgsI	TTSAA	3 cut(s)	271, 611, 769
AjnI	CCWGG	2 cut(s)	454, 586
AluBI	AGCT	7 cut(s)	108, 235, 274, 435, 752, 801, 823
AluI	AGCT	7 cut(s)	108, 235, 274, 435, 752, 801, 823
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	152, 593
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	446, 812
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	3 cut(s)	72, 235, 531
ApoI	RAATTY	2 cut(s)	316, 440
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	77, 200, 618
AspS9I	GGNCC	1 cut(s)	577
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	6 cut(s)	34, 142, 289, 413, 608, 799
AvaII	GGWCC	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	742
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	742
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	84, 222, 518
BccI	CCATC	2 cut(s)	161, 212
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	456, 588
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	152, 593
BfoI	RGCGCY	2 cut(s)	78, 201
BisI	GCNGC	5 cut(s)	5, 73, 196, 236, 532
BlsI	GCNGC	5 cut(s)	6, 74, 197, 237, 533
Bme1390I	CCNGG	3 cut(s)	226, 456, 588
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	3 cut(s)	199, 223, 291
BmrFI	CCNGG	3 cut(s)	226, 456, 588
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	789
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	553
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	162, 174, 210, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 503, 593
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	465, 776
Bse3DI	GCAATG	2 cut(s)	388, 723
BseBI	CCWGG	2 cut(s)	456, 588
BseDI	CCNNGG	4 cut(s)	162, 174, 210, 225
BseGI	GGATG	5 cut(s)	153, 220, 665, 699, 780
BseLI	CCNNNNNNNGG	3 cut(s)	163, 503, 593
BseMI	GCAATG	2 cut(s)	388, 723
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	465, 776
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	3 cut(s)	84, 222, 518
Bsh1236I	CGCG	2 cut(s)	18, 417
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	186, 225
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	163, 503, 593
BsmAI	GTCTC	2 cut(s)	152, 593
BsmFI	GGGAC	1 cut(s)	529
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	2 cut(s)	451, 804
Bsp68I	TCGCGA	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	18, 417
BspLI	GGNNCC	3 cut(s)	199, 223, 291
BspPI	GGATC	2 cut(s)	446, 812
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	388, 723
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	465, 776
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	162, 174, 210, 225
BssMI	GATC	2 cut(s)	451, 804
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	162, 174
Bst2UI	CCWGG	2 cut(s)	456, 588
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	2 cut(s)	540, 786
BstC8I	GCNNGC	2 cut(s)	187, 620
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	5 cut(s)	153, 220, 665, 699, 780
BstFNI	CGCG	2 cut(s)	18, 417
BstH2I	RGCGCY	2 cut(s)	78, 201
BstHHI	GCGC	3 cut(s)	77, 200, 618
BstKTI	GATC	2 cut(s)	454, 807
BstMAI	GTCTC	2 cut(s)	152, 593
BstMBI	GATC	2 cut(s)	451, 804
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 540, 786
BstNI	CCWGG	2 cut(s)	456, 588
BstSCI	CCNGG	3 cut(s)	224, 454, 586
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	2 cut(s)	18, 417
BstV1I	GCAGC	3 cut(s)	84, 222, 518
BstV2I	GAAGAC	1 cut(s)	553
BtsCI	GGATG	5 cut(s)	153, 220, 665, 699, 780
BtsI	GCAGTG	2 cut(s)	708, 856
BtsIMutI	CAGTG	3 cut(s)	472, 708, 856
BtuMI	TCGCGA	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	187, 620
CfoI	GCGC	3 cut(s)	77, 200, 618
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	577
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	59, 241, 560
CviAII	CATG	1 cut(s)	844
CviQI	GTAC	3 cut(s)	59, 241, 560
DdeI	CTNAG	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	2 cut(s)	453, 806
DpnII	GATC	2 cut(s)	451, 804
DraIII	CACNNNGTG	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	100, 193
Eco130I	CCWWGG	2 cut(s)	162, 174
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	454, 586
EcoT14I	CCWWGG	2 cut(s)	162, 174
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	162, 174
FaeI	CATG	1 cut(s)	847
FaiI	YATR	7 cut(s)	90, 255, 305, 639, 671, 828, 845
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	1 cut(s)	843
FauI	CCCGC	4 cut(s)	182, 250, 788, 820
FblI	GTMKAC	2 cut(s)	54, 180
Fnu4HI	GCNGC	5 cut(s)	5, 73, 196, 236, 532
FokI	GGATG	5 cut(s)	140, 227, 652, 706, 767
Fsp4HI	GCNGC	5 cut(s)	5, 73, 196, 236, 532
GlaI	GCGC	3 cut(s)	76, 199, 617
GluI	GCNGC	5 cut(s)	5, 73, 196, 236, 532
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	2 cut(s)	78, 201
HapII	CCGG	2 cut(s)	186, 225
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	3 cut(s)	77, 200, 618
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	847
Hin6I	GCGC	3 cut(s)	75, 198, 616
HinP1I	GCGC	3 cut(s)	75, 198, 616
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	22, 488, 653
HpaII	CCGG	2 cut(s)	186, 225
HphI	GGTGA	6 cut(s)	34, 142, 289, 413, 608, 799
Hpy166II	GTNNAC	5 cut(s)	55, 181, 577, 740, 841
Hpy188I	TCNGA	4 cut(s)	133, 211, 503, 658
Hpy188III	TCNNGA	2 cut(s)	17, 64
Hpy8I	GTNNAC	5 cut(s)	55, 181, 577, 740, 841
Hpy99I	CGWCG	2 cut(s)	50, 59
HpyAV	CCTTC	5 cut(s)	133, 136, 256, 704, 826
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	7 cut(s)	388, 524, 534, 557, 716, 740, 789
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 540, 786
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	847
HspAI	GCGC	3 cut(s)	75, 198, 616
KasI	GGCGCC	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	451, 804
LmnI	GCTCC	4 cut(s)	113, 227, 798, 828
Lsp1109I	GCAGC	3 cut(s)	84, 222, 518
LweI	GCATC	1 cut(s)	789
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	82, 472, 761
MalI	GATC	2 cut(s)	453, 806
MboI	GATC	2 cut(s)	451, 804
MboII	GAAGA	4 cut(s)	19, 118, 558, 719
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	2 cut(s)	316, 440
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	228
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	2 cut(s)	186, 225
MspR9I	CCNGG	3 cut(s)	226, 456, 588
MvaI	CCWGG	2 cut(s)	456, 588
MvnI	CGCG	2 cut(s)	18, 417
MwoI	GCNNNNNNNGC	3 cut(s)	195, 540, 786
NaeI	GCCGGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	451, 804
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	847
NlaIV	GGNNCC	3 cut(s)	199, 223, 291
NmuCI	GTSAC	1 cut(s)	82
NruI	TCGCGA	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	22, 488, 653
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	6, 74, 197, 237, 533
PluTI	GGCGCC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	454, 586
PspGI	CCWGG	2 cut(s)	454, 586
PspN4I	GGNNCC	3 cut(s)	199, 223, 291
PspPI	GGNCC	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	18
RsaI	GTAC	3 cut(s)	60, 242, 561
RsaNI	GTAC	3 cut(s)	59, 241, 560
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	5 cut(s)	5, 73, 196, 236, 532
Sau3AI	GATC	2 cut(s)	451, 804
Sau96I	GGNCC	1 cut(s)	577
ScrFI	CCNGG	3 cut(s)	226, 456, 588
SduI	GDGCHC	1 cut(s)	742
SfaNI	GCATC	1 cut(s)	789
SfoI	GGCGCC	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
Sse9I	AATT	2 cut(s)	316, 440
SspDI	GGCGCC	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	224, 454, 586
StyI	CCWWGG	2 cut(s)	162, 174
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	54, 116
TasI	AATT	2 cut(s)	316, 440
TatI	WGTACW	2 cut(s)	240, 559
TauI	GCSGC	2 cut(s)	7, 198
TfiI	GAWTC	3 cut(s)	22, 488, 653
TscAI	CASTG	3 cut(s)	472, 708, 856
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	72, 235, 531
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	19, 654
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	472, 708, 856
Tth111I	GACNNNGTC	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	738
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	2 cut(s)	316, 440
XmiI	GTMKAC	2 cut(s)	54, 180
XmnI	GAANNNNTTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.