Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8046380.1

Orthogroup ID

OG0002393

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 557

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8046380.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

tgccgaagacttgttgcagtacaggataatgttgtggaccacattccaggtcagggtgagacatcttttgaatggcgcaagcggaaaagtagcaactataacaactttgaggattctgaatgttcatccatatttgttgagcctctaaaatggatgacagcagtggaagaaggtgcaatggagggcaagttgtcctgtgcacattgtgaagctcgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009893 GO:0009987 GO:0010562 GO:0010675 GO:0010676 GO:0010906 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0031323 GO:0031325 GO:0033131 GO:0033133 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045913 GO:0045937 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0051347 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903299 GO:1903301

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

72

Amino Acids

8.21

Weight (kDa)

5.28

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18593 AT4G18593
fragaria_vesca	FvH4_7g07280
malus_domestica	MD07G1116400.v1.1 MD12G1096300.v1.1 MD14G1050900.v1.1 MD14G1089400.v1.1
prunus_persica	Prupe.4G082800_v2.0.a1 Prupe.7G034500_v2.0.a1 Prupe.7G034700_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1 Prupe.7G035100_v2.0.a1
pyrus_communis	pycom12g08530 pycom14g04220 pycom14g07910 pycom14g07920
rosa_chinensis	RchiOBHm_Chr0c29g0501071 RchiOBHm_Chr1g0337531 RchiOBHm_Chr1g0337541 RchiOBHm_Chr1g0337741 RchiOBHm_Chr1g0337801 RchiOBHm_Chr1g0337841 RchiOBHm_Chr1g0339501
rosa_laevigata	RLG00000029270
rosa_multiflora	Rmu_co8046380.1_g000001 Rmu_sc0002772.1_g000004 Rmu_sc0004249.1_g000004 Rmu_sc0015042.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062660 Rroxscaffold_3G00274530 Rroxscaffold_4G00314210 Rroxscaffold_4G00314240
rosa_rugosa	Rorug01G0135500.1
rosa_samantha	Rh1AG154800 Rh1BG124200 Rh1CG145300 Rh1DG162600 Rh1DG163000
rosa_wichuraiana	Rw1G012640 Rw1G012680 Rw1G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	53
Alw44I	GTGCAC	1 cut(s)	198
ApaLI	GTGCAC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	125, 159
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	125, 159
BstHHI	GCGC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	125, 159
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	20
CviJI	RGCY	2 cut(s)	142, 212
CviKI_1	RGCY	2 cut(s)	142, 212
CviQI	GTAC	1 cut(s)	20
DraIII	CACNNNGTG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	46
FaiI	YATR	2 cut(s)	99, 131
FokI	GGATG	2 cut(s)	112, 166
GlaI	GCGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	37, 200
Hpy188I	TCNGA	1 cut(s)	118
Hpy8I	GTNNAC	2 cut(s)	37, 200
HpyAV	CCTTC	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	17, 176, 200
HspAI	GCGC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	8, 33, 38, 60, 208
MboII	GAAGA	2 cut(s)	18, 179
MhlI	GDGCHC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	103, 153, 175
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	3 cut(s)	52, 175, 214
SgeI	CNNG	8 cut(s)	23, 35, 59, 60, 65, 91, 199, 207
SinI	GGWCC	1 cut(s)	37
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	46
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	168
VneI	GTGCAC	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.