Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

12517958 .. 12518194

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGATTTCTCCCACAATCTTTACCCATCGTAGTTTGTCTTATCTCATGGATGAGATTCCTCAGCAAGCTCTGAACGATGCAATGCAAGCTCAAGTAGTTCCCCCAATATGGCACATTGCGTCTTATCTACAGGCTGCTGCCCTTTCTGCACTCGGAATGGAGAACGAGGGACAATCAGCACTGAAGGAGGGTATTGTGCTTGAAGCCAAAAGGAAATCTGCAGCTGGACACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

79

Amino Acids

8.47

Weight (kDa)

6.24

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 45	4.7e-16	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	3 cut(s)	68, 89, 224
AluI	AGCT	3 cut(s)	68, 89, 224
ApeKI	GCWGC	3 cut(s)	134, 137, 221
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	121, 124, 233
BccI	CCATC	1 cut(s)	33
BfmI	CTRYAG	2 cut(s)	128, 219
BisI	GCNGC	3 cut(s)	135, 138, 222
BlsI	GCNGC	3 cut(s)	136, 139, 223
BmsI	GCATC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	87, 114
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	2 cut(s)	87, 114
BseMII	CTCAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	121, 124, 233
BsgI	GTGCAG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	223
BsrDI	GCAATG	2 cut(s)	87, 114
BstC8I	GCNNGC	2 cut(s)	66, 87
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 146
BstSFI	CTRYAG	2 cut(s)	128, 219
BstV1I	GCAGC	3 cut(s)	121, 124, 233
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	66, 87
CseI	GACGC	1 cut(s)	108
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	5 cut(s)	68, 89, 134, 206, 224
CviKI_1	RGCY	5 cut(s)	68, 89, 134, 206, 224
DdeI	CTNAG	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	203
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 109
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	135, 138, 222
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	135, 138, 222
GluI	GCNGC	3 cut(s)	135, 138, 222
HgaI	GACGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	72, 155
HpyAV	CCTTC	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	80, 85, 149, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 146
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	49
LpnPI	CCDG	2 cut(s)	116, 210
Lsp1109I	GCAGC	3 cut(s)	121, 124, 233
LweI	GCATC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	69, 160, 181
MspA1I	CMGCKG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	86, 146
NlaIII	CATG	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	136, 139, 223
PstI	CTGCAG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	224
SatI	GCNGC	3 cut(s)	135, 138, 222
SetI	ASST	3 cut(s)	70, 91, 226
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	2 cut(s)	128, 219
SgeI	CNNG	8 cut(s)	58, 77, 98, 104, 143, 164, 178, 212
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	55
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	3 cut(s)	134, 137, 221
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.