Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Reverse (-)

19843905 .. 19845263

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATTTCTCTTGGTCAGCAGACTTTTTTTTGCTACCACTCCTTGTTCTTTTTCAAGGTTATTCTGGAAGACAATTCAAAGAGACCTCAAACTGCAATTGGCCGTACTTACTTGCAGTTCATTGATGTTGGAAACATGGTTTCTCCCACAATTTTTGCCCGGCGTAGTTTGTCTTATCTCATGGATGAGATGCCTCAGGAGGCCCTAAATGATGCAATGCAAGCTCAAATAATTTCCCCAATATGGCACATTGCATCTTATCTTCAGGCTGCTGCGCTTTCTGCACTCGGAATGGAGACCAAGGCACAATCAGCACTGAAGGAGGGTACTCTGCTTGAAGCCAAAAGGAACACTGCAGGTGGACACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

124

Amino Acids

13.73

Weight (kDa)

7.9

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	29 - 90	2.7e-24	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	2 cut(s)	248, 338
AfaI	GTAC	2 cut(s)	106, 328
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	55, 78, 338
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	76, 290
AoxI	GGCC	2 cut(s)	100, 201
ApeKI	GCWGC	2 cut(s)	269, 272
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	256, 259
BceAI	ACGGC	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	76, 290
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	2 cut(s)	270, 273
BlsI	GCNGC	2 cut(s)	271, 274
Bme1390I	CCNGG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	180, 202, 263
BpiI	GAAGAC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	160
BsaI	GGTCTC	2 cut(s)	76, 290
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	222, 249
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	2 cut(s)	222, 249
BseMII	CTCAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	256, 259
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	102, 203
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	76, 290
BsnI	GGCC	2 cut(s)	102, 203
Bso31I	GGTCTC	2 cut(s)	76, 290
BspANI	GGCC	2 cut(s)	102, 203
BspCNI	CTCAG	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	347
BspTNI	GGTCTC	2 cut(s)	76, 290
BsrDI	GCAATG	2 cut(s)	222, 249
BssECI	CCNNGG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	277
BstMAI	GTCTC	2 cut(s)	76, 290
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 281, 311
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	256, 259
BstV2I	GAAGAC	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	102, 203
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	314, 351
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	105, 327
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	2 cut(s)	136, 181
CviJI	RGCY	5 cut(s)	102, 203, 224, 269, 341
CviKI_1	RGCY	5 cut(s)	102, 203, 224, 269, 341
CviQI	GTAC	2 cut(s)	105, 327
DdeI	CTNAG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	300
Eco31I	GGTCTC	2 cut(s)	76, 290
Eco57I	CTGAAG	2 cut(s)	248, 338
Eco81I	CCTNAGG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	139, 184
FaiI	YATR	3 cut(s)	137, 182, 244
FatI	CATG	2 cut(s)	135, 180
Fnu4HI	GCNGC	2 cut(s)	270, 273
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	270, 273
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	270, 273
HaeIII	GGCC	2 cut(s)	102, 203
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	139, 184
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	2 cut(s)	65, 197
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	7 cut(s)	95, 115, 215, 220, 254, 284, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 281, 311
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	139, 184
HspAI	GCGC	1 cut(s)	275
LpnPI	CCDG	5 cut(s)	50, 173, 182, 251, 342
Lsp1109I	GCAGC	2 cut(s)	256, 259
LweI	GCATC	3 cut(s)	180, 202, 263
MboII	GAAGA	2 cut(s)	80, 254
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	4 cut(s)	73, 96, 150, 231
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	96, 193, 204, 316
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	221, 281, 311
NciI	CCSGG	1 cut(s)	160
NlaIII	CATG	2 cut(s)	139, 184
PaqCI	CACCTGC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	271, 274
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	106, 328
RsaNI	GTAC	2 cut(s)	105, 327
SatI	GCNGC	2 cut(s)	270, 273
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	4 cut(s)	60, 88, 226, 361
SfaNI	GCATC	3 cut(s)	180, 202, 263
SfcI	CTRYAG	1 cut(s)	354
Sse9I	AATT	4 cut(s)	73, 96, 150, 231
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	300
TasI	AATT	4 cut(s)	73, 96, 150, 231
TscAI	CASTG	2 cut(s)	321, 358
TseI	GCWGC	2 cut(s)	269, 272
TspDTI	ATGAA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	321, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.