Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

47376558 .. 47381885

Gene Structure 5328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTTTCTCCCACAATTTTTGCCCGGCGTAGTTTGACTTATCTCATGGATGAGATGCCTCAGGAGGCTCTAAATGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTCAGGCTGAATCTTCAGATGCTGACAGATTCTTGCTTGGAAGGACAGCTGTCTCAAGATGATGATTCCTTCTCATATTTTGATGGGTATCCCCTCTCGTTCCAAATGTGGACCAACCAAATGCAGGAAACATTAGATTCAAAGAAAAATGGGGATTCTGCTTTTAAGCAGAAGGACTTTAGAACCGCAATCGAATGTTATTCACAGTTCATTGATGTTGGAAACATGGTTTCTCCCACAATTTTTGCCCGGCGTAGTTTGTCTTATCTCATGGATGAGATGCCTCAGGAAGCTCTAAATGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTTCAGGCTGCTGCGCTTTCTGCACTAGGAATGGAGACTGAGGCGCAATCAGCACTGAAGGAAGGTACTATGCTTGAAGCCAAAAGGAACACTGCAGCTGGACACAAGGGAAATCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

199

Amino Acids

22.35

Weight (kDa)

4.63

Isoelectric Point (pI)

62.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 43	8.3e-17	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_BSK1_C	PF25575	73 - 162	2.4e-47	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	312
AcuI	CTGAAG	3 cut(s)	125, 464, 554
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	3 cut(s)	108, 250, 459
AgsI	TTSAA	2 cut(s)	267, 554
AluBI	AGCT	5 cut(s)	89, 175, 419, 440, 575
AluI	AGCT	5 cut(s)	89, 175, 419, 440, 575
Alw26I	GTCTC	2 cut(s)	183, 506
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	3 cut(s)	485, 488, 572
AspLEI	GCGC	2 cut(s)	493, 523
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	2 cut(s)	25, 376
AvaII	GGWCC	1 cut(s)	237
AxyI	CCTNAGG	2 cut(s)	60, 411
BbvI	GCAGC	3 cut(s)	472, 475, 584
BccI	CCATC	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	225
BcnI	CCSGG	2 cut(s)	25, 376
BcoDI	GTCTC	2 cut(s)	183, 506
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	486, 489, 573
BlsI	GCNGC	3 cut(s)	487, 490, 574
Bme1390I	CCNGG	2 cut(s)	25, 376
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	25, 376
BmsI	GCATC	7 cut(s)	45, 67, 128, 135, 396, 418, 479
BoxI	GACNNNNGTC	1 cut(s)	175
BpuEI	CTTGAG	3 cut(s)	75, 165, 426
BpuMI	CCSGG	2 cut(s)	25, 376
BsaBI	GATNNNNATC	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 250, 459
Bse21I	CCTNAGG	2 cut(s)	60, 411
Bse3DI	GCAATG	4 cut(s)	87, 114, 438, 465
Bse8I	GATNNNNATC	1 cut(s)	213
BseGI	GGATG	2 cut(s)	55, 406
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	108, 250, 459
BseMI	GCAATG	4 cut(s)	87, 114, 438, 465
BseMII	CTCAG	4 cut(s)	74, 142, 425, 507
BseXI	GCAGC	3 cut(s)	472, 475, 584
BsgI	GTGCAG	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	25, 376
BslI	CCNNNNNNNGG	3 cut(s)	108, 250, 459
BsmAI	GTCTC	2 cut(s)	183, 506
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	4 cut(s)	73, 141, 424, 508
BspMAI	CTGCAG	1 cut(s)	574
BsrDI	GCAATG	4 cut(s)	87, 114, 438, 465
Bst4CI	ACNGT	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	87, 438
BstDEI	CTNAG	4 cut(s)	60, 128, 411, 516
BstF5I	GGATG	2 cut(s)	55, 406
BstHHI	GCGC	2 cut(s)	493, 523
BstMAI	GTCTC	2 cut(s)	183, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 437, 497, 527
BstPAI	GACNNNNGTC	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	23, 374
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	472, 475, 584
Bsu36I	CCTNAGG	2 cut(s)	60, 411
BsuI	GTATCC	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	55, 406
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	530, 567
Cac8I	GCNNGC	2 cut(s)	87, 438
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	2 cut(s)	493, 523
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	543
CspCI	CAANNNNNGTGG	3 cut(s)	36, 352, 387
CviAII	CATG	3 cut(s)	46, 352, 397
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	4 cut(s)	60, 128, 411, 516
Eco47I	GGWCC	1 cut(s)	237
Eco57I	CTGAAG	3 cut(s)	125, 464, 554
Eco81I	CCTNAGG	2 cut(s)	60, 411
FaeI	CATG	3 cut(s)	49, 355, 400
FaiI	YATR	7 cut(s)	47, 109, 202, 353, 398, 460, 548
FatI	CATG	3 cut(s)	45, 351, 396
Fnu4HI	GCNGC	3 cut(s)	486, 489, 573
FokI	GGATG	2 cut(s)	62, 413
Fsp4HI	GCNGC	3 cut(s)	486, 489, 573
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	2 cut(s)	492, 522
GluI	GCNGC	3 cut(s)	486, 489, 573
HapII	CCGG	2 cut(s)	25, 376
HhaI	GCGC	2 cut(s)	493, 523
Hin1II	CATG	3 cut(s)	49, 355, 400
Hin6I	GCGC	2 cut(s)	491, 521
HinP1I	GCGC	2 cut(s)	491, 521
HinfI	GANTC	5 cut(s)	136, 155, 191, 263, 281
HpaII	CCGG	2 cut(s)	25, 376
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	62, 182, 413
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	5 cut(s)	161, 205, 292, 529, 533
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	9 cut(s)	80, 85, 119, 250, 431, 436, 470, 500, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 437, 497, 527
HpyF3I	CTNAG	4 cut(s)	60, 128, 411, 516
Hsp92II	CATG	3 cut(s)	49, 355, 400
HspAI	GCGC	2 cut(s)	491, 521
LpnPI	CCDG	8 cut(s)	38, 47, 115, 236, 389, 398, 467, 561
Lsp1109I	GCAGC	3 cut(s)	472, 475, 584
LweI	GCATC	7 cut(s)	45, 67, 128, 135, 396, 418, 479
MaeI	CTAG	1 cut(s)	503
MboII	GAAGA	2 cut(s)	131, 470
MluCI	AATT	4 cut(s)	15, 96, 366, 447
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	5 cut(s)	58, 69, 230, 420, 511
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	2 cut(s)	175, 575
MspI	CCGG	2 cut(s)	25, 376
MspR9I	CCNGG	2 cut(s)	25, 376
MwoI	GCNNNNNNNGC	4 cut(s)	86, 437, 497, 527
NciI	CCSGG	2 cut(s)	25, 376
NlaIII	CATG	3 cut(s)	49, 355, 400
PfeI	GAWTC	5 cut(s)	136, 155, 191, 263, 281
PkrI	GCNGC	3 cut(s)	487, 490, 574
PshAI	GACNNNNGTC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	148
PvuII	CAGCTG	2 cut(s)	175, 575
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	486, 489, 573
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	25, 376
SetI	ASST	6 cut(s)	91, 177, 421, 442, 544, 577
SfaNI	GCATC	7 cut(s)	45, 67, 128, 135, 396, 418, 479
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	3 cut(s)	90, 180, 441
SmoI	CTYRAG	3 cut(s)	90, 180, 441
Sse9I	AATT	4 cut(s)	15, 96, 366, 447
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	2 cut(s)	23, 374
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	318
TasI	AATT	4 cut(s)	15, 96, 366, 447
TfiI	GAWTC	5 cut(s)	136, 155, 191, 263, 281
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	537, 574
TseI	GCWGC	3 cut(s)	485, 488, 572
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	537, 574
VpaK11BI	GGWCC	1 cut(s)	237
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.