pycom01g08680

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
9629839 .. 9630228
390 bp
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UTR
Exon/CDS
Intron
pycom01g08680.2

Sequence Viewer

Length: 258 bp
ATGATTTCTCCAACAATTTTTGCCCGGCGTTGTTTGTCTTATCTCATGAGTGACAAGCCTCAGGAAGCTCTCAACGATGCAATGCAAGCACAAGTAGTTTCCCCTGTTTGGCACATTGTATCTTATCTTCAAGGTGCTGCCCTTTCGATTCTTGCTTGGAAGGACAGCTTTCTAATGATGATGGTACTGAGTTGGCACACTTGGCTTCACGATGTTTACAATCTAAACCCTGAGAGCGACCAAATCCAAAATCGTTAG

Protein Analysis

86

Amino Acids

9.85

Weight (kDa)

5.77

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 2 cut(s) 68, 168
AluI AGCT 2 cut(s) 68, 168
ApeKI GCWGC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 25
AxyI CCTNAGG 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 25
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse21I CCTNAGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 3 cut(s) 74, 179, 222
BseXI GCAGC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 73, 180, 223
BspHI TCATGA 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 60, 188, 231
BstMWI GCNNNNNNNGC 2 cut(s) 86, 202
BstSCI CCNGG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 45
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 58, 68, 168, 205
CviKI_1 RGCY 4 cut(s) 58, 68, 168, 205
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 3 cut(s) 60, 188, 231
Eco81I CCTNAGG 1 cut(s) 60
FaeI CATG 1 cut(s) 49
FaiI YATR 1 cut(s) 47
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
HapII CCGG 1 cut(s) 25
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 46, 62, 209
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 80, 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 202
HpyF3I CTNAG 3 cut(s) 60, 188, 231
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 4 cut(s) 38, 47, 117, 243
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 1 cut(s) 119
MluCI AATT 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 1 cut(s) 69
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 86, 202
NciI CCSGG 1 cut(s) 25
NlaIII CATG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 50
PagI TCATGA 1 cut(s) 45
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 139
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SatI GCNGC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 25
SetI ASST 3 cut(s) 70, 136, 170
SfaNI GCATC 1 cut(s) 67
Sse9I AATT 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 23
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 15
TfiI GAWTC 1 cut(s) 148
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.