Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

9601605 .. 9601796

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGAGTGACAAGCCTCAGGAAGCTATAAATGATGCAATGCAAGCACAAGTAGTTTCCCCACTTTGGCACATTGCATGTTATCTTCAGGCTATTGCCCTTTCGGCCCTTGGAATGGACATTGAAGCTCAAGCAGCACTTAAGGAGGGTACTACGCTTGAATCCAAAAGGAGTAAAGCAGTTGGACAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

64

Amino Acids

6.76

Weight (kDa)

5.62

Isoelectric Point (pI)

69.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 30	6e-10	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	63, 112
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	122, 158
AluBI	AGCT	2 cut(s)	23, 125
AluI	AGCT	2 cut(s)	23, 125
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 112
Bse21I	CCTNAGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	42, 69
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	63, 112
BseMI	GCAATG	2 cut(s)	42, 69
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	63, 112
BsnI	GGCC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	42, 69
BssECI	CCNNGG	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	106
BstAFI	CTTAAG	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 101, 131
BstNSI	RCATGY	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	143
Bsu36I	CCTNAGG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	5 cut(s)	13, 23, 89, 104, 125
CviKI_1	RGCY	5 cut(s)	13, 23, 89, 104, 125
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	68
Eco81I	CCTNAGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	78
FaiI	YATR	2 cut(s)	26, 76
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	35, 40, 74
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 101, 131
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	78
LpnPI	CCDG	2 cut(s)	2, 71
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	2 cut(s)	24, 136
MseI	TTAA	1 cut(s)	138
MspCI	CTTAAG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	41, 101, 131
NlaIII	CATG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	2 cut(s)	25, 127
SfaNI	GCATC	1 cut(s)	22
SgeI	CNNG	9 cut(s)	22, 29, 53, 59, 87, 98, 119, 140, 167
SmlI	CTYRAG	2 cut(s)	126, 137
SmoI	CTYRAG	2 cut(s)	126, 137
StyI	CCWWGG	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	5
Vha464I	CTTAAG	1 cut(s)	137
XceI	RCATGY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.