Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

47666241 .. 47669624

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGTTTCTCCCACAATTTTTGTCCGTCGTAGTTTGTCTTATCTCATGAATGAGATGCCTCTGGAAGCTTTAAACGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTACAGGTCGCTGCCCTTTCTGCACTCGGATGGAGGCTGAGGCGCAATCAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

60

Amino Acids

6.9

Weight (kDa)

9.96

Isoelectric Point (pI)

77.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 44	1.5e-18	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	68, 89
AluI	AGCT	2 cut(s)	68, 89
ApeKI	GCWGC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmsI	GCATC	3 cut(s)	45, 67, 128
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	87, 114
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	2 cut(s)	87, 114
BseMII	CTCAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	87, 114
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 146, 175
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	171
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	3 cut(s)	68, 89, 163
CviKI_1	RGCY	3 cut(s)	68, 89, 163
DdeI	CTNAG	1 cut(s)	164
DraI	TTTAAA	1 cut(s)	72
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 109
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	2 cut(s)	46, 62
Hpy99I	CGWCG	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	80, 85, 119, 149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 146, 175
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	169
LpnPI	CCDG	2 cut(s)	47, 116
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	3 cut(s)	45, 67, 128
MluCI	AATT	2 cut(s)	15, 96
MnlI	CCTC	3 cut(s)	69, 153, 159
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	86, 146, 175
NlaIII	CATG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	138
SetI	ASST	3 cut(s)	70, 91, 135
SfaNI	GCATC	3 cut(s)	45, 67, 128
SfcI	CTRYAG	1 cut(s)	128
SgeI	CNNG	6 cut(s)	58, 74, 98, 104, 143, 164
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	15, 96
TasI	AATT	2 cut(s)	15, 96
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.