Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Reverse (-)

57054138 .. 57056915

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGTTTCTCCGATAGTTTTTGCACGCTGTAGTTTGTCTTATCTCATGAGTGAAATGCCACAGGAAGCCTTGAATAATGCATCACAAGCCCAAGTGATTTCCCCTATTTGGCACATTGCATCCTATTTGCAAGCTGCAGGTCTTTTTTTACTTGGAAGGGATGATGAGGCACAAGTAGCCCTCAAAGAGCGTTGTGTACTTGAAACTAAAAGGAAAGCAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

75

Amino Acids

8.28

Weight (kDa)

6.54

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 45	5.1e-16	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	73, 203
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	121
BfmI	CTRYAG	2 cut(s)	28, 135
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmsI	GCATC	2 cut(s)	89, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	119, 166
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	25, 132
BstF5I	GGATG	2 cut(s)	119, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 176
BstSFI	CTRYAG	2 cut(s)	28, 135
BstV1I	GCAGC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	119, 166
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	25, 132
CciI	TCATGA	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	4 cut(s)	68, 89, 134, 179
CviKI_1	RGCY	4 cut(s)	68, 89, 134, 179
CviQI	GTAC	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	1 cut(s)	49
FaiI	YATR	1 cut(s)	47
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	106, 173
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	23, 80, 119, 130, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 176
Hsp92II	CATG	1 cut(s)	49
LpnPI	CCDG	2 cut(s)	47, 123
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	89, 128
MnlI	CCTC	2 cut(s)	160, 191
Mph1103I	ATGCAT	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	86, 176
NlaIII	CATG	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SatI	GCNGC	1 cut(s)	135
SetI	ASST	2 cut(s)	136, 142
SfaNI	GCATC	2 cut(s)	89, 128
SfcI	CTRYAG	2 cut(s)	28, 135
TatI	WGTACW	1 cut(s)	196
TseI	GCWGC	1 cut(s)	134
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.