Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

47357522 .. 47359196

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG256400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGACAAATGAGGAAGCTTTAAACGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCACCTTATCTACAAGCTGCTGCCCTTTTTGCACTCGGAATGGAGACTGAGGCACAATCAGCACTGAAGGAGGGTACTGTGCTTGAAACCAAAAGGAACACTGCAGCTGGACTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

61

Amino Acids

6.56

Weight (kDa)

4.53

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	3 - 28	1.3e-07	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	4 cut(s)	17, 38, 83, 173
AluI	AGCT	4 cut(s)	17, 38, 83, 173
Alw26I	GTCTC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	83, 86, 170
AvaI	CYCGRG	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	70, 73, 182
BcoDI	GTCTC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	3 cut(s)	84, 87, 171
BlsI	GCNGC	3 cut(s)	85, 88, 172
BmeT110I	CYCGRG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	36, 63
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	2 cut(s)	36, 63
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	70, 73, 182
BsiHKCI	CYCGRG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	36, 63
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 95, 125
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	70, 73, 182
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	128, 165
Cac8I	GCNNGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	141
CviJI	RGCY	4 cut(s)	17, 38, 83, 173
CviKI_1	RGCY	4 cut(s)	17, 38, 83, 173
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	179
FaiI	YATR	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	84, 87, 171
Fsp4HI	GCNGC	3 cut(s)	84, 87, 171
GluI	GCNGC	3 cut(s)	84, 87, 171
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	5 cut(s)	29, 34, 68, 98, 170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 95, 125
HpyF3I	CTNAG	1 cut(s)	114
LpnPI	CCDG	1 cut(s)	159
Lsp1109I	GCAGC	3 cut(s)	70, 73, 182
LweI	GCATC	1 cut(s)	16
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	4, 109, 130
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	35, 95, 125
PaeR7I	CTCGAG	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	85, 88, 172
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	3 cut(s)	84, 87, 171
SchI	GAGTC	1 cut(s)	171
SetI	ASST	5 cut(s)	19, 40, 73, 85, 175
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	179
SgeI	CNNG	5 cut(s)	47, 53, 92, 113, 161
SlaI	CTCGAG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	39, 179
SmoI	CTYRAG	2 cut(s)	39, 179
Sse9I	AATT	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	2 cut(s)	135, 172
TseI	GCWGC	3 cut(s)	83, 86, 170
TspRI	CASTG	2 cut(s)	135, 172
XhoI	CTCGAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.