Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

9322113 .. 9324756

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAAAACCCTCACTTAATCACTTTCTCCAAAACCAACTCTCAAAAGTCTCCATCTTTAAACCCTTTTTCTTTCCACAGAATCCAAGCGAAAGCAAAAGCATCACGATTCACTGAAAAACCGAAGGCCCAACGCTCTCGACCCTGTCTGCAATTTGAGCTCACAAATTTTGGGGTCTTTCCATTTCAGTTCATTGATGTTGAAACAATGGTTTCTCCAACAATTTTTGCCCGGCGTTGTTTGTCTTATCTCATGAGTGACAAGCCTCACGAAGCTCTCAACGATGCAATGCAAGCACAAGAAGTTTCCCCTGTTTGGCACATTGTATCTTATCTTCGGGGTGCTGCCCTTTCGGCCCTTGGAATGGACAGTGAAGTTCAAGCAGTACTTGTTATGAACTCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.19

Weight (kDa)

9.51

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	166
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	315, 364
AgsI	TTSAA	2 cut(s)	203, 380
AluBI	AGCT	2 cut(s)	160, 275
AluI	AGCT	2 cut(s)	160, 275
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	126, 354
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	127, 355
AsuC2I	CCSGG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	162
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	127, 355
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	110, 274
BpuMI	CCSGG	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 364
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	315, 364
BseMI	GCAATG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	2 cut(s)	128, 356
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	315, 364
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	128, 356
Bsp1286I	GDGCHC	1 cut(s)	162
BspANI	GGCC	2 cut(s)	128, 356
BspHI	TCATGA	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 293, 353
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	128, 356
BtsIMutI	CAGTG	2 cut(s)	111, 376
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	127, 355
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	128, 160, 265, 275, 356
CviKI_1	RGCY	5 cut(s)	128, 160, 265, 275, 356
CviQI	GTAC	1 cut(s)	386
DraI	TTTAAA	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 395
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	128, 356
HapII	CCGG	1 cut(s)	232
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	81, 108
HpaII	CCGG	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	105, 138, 253, 269
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	151, 287, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 293, 353
Hsp92II	CATG	1 cut(s)	256
LpnPI	CCDG	3 cut(s)	157, 245, 324
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	110, 274
MaeIII	GTNAC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	3 cut(s)	152, 166, 222
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	21, 276
MseI	TTAA	2 cut(s)	17, 59
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	157, 293, 353
NciI	CCSGG	1 cut(s)	232
NlaIII	CATG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	81, 108
PflFI	GACNNNGTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	127, 355
PsyI	GACNNNGTC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	17, 59
SatI	GCNGC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	127, 355
ScaI	AGTACT	1 cut(s)	387
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	2 cut(s)	162, 277
SfaNI	GCATC	2 cut(s)	110, 274
Sse9I	AATT	3 cut(s)	152, 166, 222
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	139
TasI	AATT	3 cut(s)	152, 166, 222
TatI	WGTACW	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	81, 108
Tru1I	TTAA	2 cut(s)	17, 59
Tru9I	TTAA	2 cut(s)	17, 59
TscAI	CASTG	2 cut(s)	118, 376
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	17, 181
TspRI	CASTG	2 cut(s)	118, 376
Tth111I	GACNNNGTC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	166
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.